RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 SIN3BO75182 1162 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 MYL1P05976 194 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 TRIM49P0CI25 452 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 TRIM49CP0CI26 452 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 PDIA4P13667 645 aaKnown RBP8.51□□□□□ -1.05
USP39-216ENST00000490193 CKMT2P17540 419 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 NR2F2P24468 414 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 ACP1P24666 158 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 ACTN2P35609 894 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 ST8SIA6P61647 398 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 CFHR1Q03591 330 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 TBC1D25Q3MII6 688 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 KMT5BQ4FZB7 885 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 FAM133BQ5BKY9 247 aaKnown RBP8.51□□□□□ -1.05
USP39-216ENST00000490193 PRAMEF14Q5SWL7 426 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 C9orf64Q5T6V5 341 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 BSPRYQ5W0U4 402 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 NUGGCQ68CJ6 796 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 KRT39Q6A163 491 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 IQCHQ86VS3 1027 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 LURAP1LQ8IV03 231 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 GRAMD1CQ8IYS0 662 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 CEP57L1Q8IYX8 460 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 EID2Q8N6I1 236 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 DCBLD1Q8N8Z6 715 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 CCDC150Q8NCX0 1101 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 RNF139Q8WU17 664 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 KCTD13Q8WZ19 329 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 FAM131CQ96AQ9 280 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 NEUROG2Q9H2A3 272 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 MTG2Q9H4K7 406 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 CNGB3Q9NQW8 809 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 AASDHPPTQ9NRN7 309 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 SFMBT1Q9UHJ3 866 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 INTS6Q9UL03 887 aaKnown RBP8.51□□□□□ -1.05
USP39-216ENST00000490193 CLCA2Q9UQC9 943 aa8.51□□□□□ -1.05
USP39-216ENST00000490193 A0A1W2PP55 124 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 FAM47DPA6NHR8 397 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 J3QKU1 62 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 TLR4O00206 839 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 TULP2O00295 520 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 MSI1O43347 362 aaKnown RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 TBL1XO60907 577 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 RNASEH2AO75792 299 aaKnown RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 SRPRAP08240 638 aaKnown RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 SETSIPP0DME0 302 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 KRT13P13646 458 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 GOT1P17174 413 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 GLDCP23378 1020 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 SLC6A4P31645 630 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 SLC8A1P32418 973 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 NUDT1P36639 197 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 CSKP41240 450 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 SLC11A2P49281 568 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 ADPRHP54922 357 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 DAOAP59103 153 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 INSM1Q01101 510 aaPredicted RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 ADIGQ0VDE8 80 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 BST2Q10589 180 aaKnown RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 OVGP1Q12889 678 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 BNIP3Q12983 259 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 GOLGA7BQ2TAP0 167 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 SLC45A4Q5BKX6 768 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 NAPEPLDQ6IQ20 393 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 RFWD3Q6PCD5 774 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 SND1Q7KZF4 910 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP39-216ENST00000490193 MFN1Q8IWA4 741 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 UNC45BQ8IWX7 931 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 DHX40Q8IX18 779 aaKnown RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 SPACA3Q8IXA5 215 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 FAM186BQ8IYM0 893 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 AADATQ8N5Z0 425 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 MFSD2AQ8NA29 543 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 HJURPQ8NCD3 748 aaPredicted RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 FBXL13Q8NEE6 735 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 GANCQ8TET4 914 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 NDRG1Q92597 394 aaKnown RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 EDEM1Q92611 657 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 SEMA4DQ92854 862 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 PAGE5Q96GU1 130 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 SERAC1Q96JX3 654 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 PRICKLE1Q96MT3 831 aaPredicted RBP8.5□□□□□ -1.05
USP39-216ENST00000490193 FAM129BQ96TA1 746 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 OMDQ99983 421 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 KDM4CQ9H3R0 1056 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 LRRC4Q9HBW1 653 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 SERTAD1Q9UHV2 236 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 TSPAN16Q9UKR8 245 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 PCDHA7Q9UN72 937 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 DOCK9Q9BZ29 2069 aa8.5□□□□□ -1.05
USP39-216ENST00000490193 EDDM13A0A1B0GTR0 161 aa8.49□□□□□ -1.05
USP39-216ENST00000490193 ACSL4O60488 711 aa8.49□□□□□ -1.05
USP39-216ENST00000490193 MAGEC1O60732 1142 aa8.49□□□□□ -1.05
USP39-216ENST00000490193 DXOO77932 396 aaKnown RBP8.49□□□□□ -1.05
USP39-216ENST00000490193 RHOBTB3O94955 611 aa8.49□□□□□ -1.05
USP39-216ENST00000490193 ADH1BP00325 375 aa8.49□□□□□ -1.05
USP39-216ENST00000490193 C5AR1P21730 350 aa8.49□□□□□ -1.05
USP39-216ENST00000490193 DRD3P35462 400 aa8.49□□□□□ -1.05
USP39-216ENST00000490193 PSMC2P35998 433 aaKnown RBP8.49□□□□□ -1.05
USP39-216ENST00000490193 MXI1P50539 228 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms