RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 OTUD1Q5VV17 481 aaPredicted RBP23.75■■□□□ 1.39
COL9A3-213ENST00000489045 FBXL22Q6P050 247 aa23.75■■□□□ 1.39
COL9A3-213ENST00000489045 DHX40Q8IX18 779 aaKnown RBP23.75■■□□□ 1.39
COL9A3-213ENST00000489045 KDM1BQ8NB78 822 aa23.75■■□□□ 1.39
COL9A3-213ENST00000489045 STK33Q9BYT3 514 aa23.75■■□□□ 1.39
COL9A3-213ENST00000489045 RSPH9Q9H1X1 276 aaPredicted RBP23.75■■□□□ 1.39
COL9A3-213ENST00000489045 VPS16Q9H269 839 aa23.75■■□□□ 1.39
COL9A3-213ENST00000489045 MAP1BP46821 2468 aaKnown RBP23.74■■□□□ 1.39
COL9A3-213ENST00000489045 A0A1B0GVM2 712 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 TCAF2A6NFQ2 919 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 TTC34A8MYJ7 566 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 MATKP42679 507 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 NUMBP49757 651 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 RNASE9P60153 205 aaKnown RBP23.74■■□□□ 1.39
COL9A3-213ENST00000489045 ECT2LQ008S8 904 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 CENPCQ03188 943 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 SEMA3BQ13214 749 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 KRT31Q15323 416 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 NOP9Q86U38 636 aaKnown RBP23.74■■□□□ 1.39
COL9A3-213ENST00000489045 ADAM33Q9BZ11 813 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 PCED1AQ9H1Q7 454 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 GANQ9H2C0 597 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 C6orf106Q9H6K1 298 aaPredicted RBP23.74■■□□□ 1.39
COL9A3-213ENST00000489045 EIF2B4Q9UI10 523 aaKnown RBP23.74■■□□□ 1.39
COL9A3-213ENST00000489045 PCNX2A6NKB5 2137 aa23.74■■□□□ 1.39
COL9A3-213ENST00000489045 PDGFRAP16234 1089 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 GGCXP38435 758 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 GABRB2P47870 512 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 KLK7P49862 253 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 GRIK2Q13002 908 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 MTA1Q13330 715 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 SLC12A1Q13621 1099 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 ARID5BQ14865 1188 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 RNF219Q5W0B1 726 aaPredicted RBP23.73■■□□□ 1.39
COL9A3-213ENST00000489045 PIP4P1Q86T03 277 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 ERICH1Q86X53 443 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 SNX19Q92543 992 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 IGSF8Q969P0 613 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 C18orf8Q96DM3 657 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 RPL10LQ96L21 214 aaKnown RBP23.73■■□□□ 1.39
COL9A3-213ENST00000489045 RPRD1AQ96P16 312 aaPredicted RBP23.73■■□□□ 1.39
COL9A3-213ENST00000489045 NPY6RQ99463 290 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 BTBD1Q9H0C5 482 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 SLC32A1Q9H598 525 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 PIGVQ9NUD9 493 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 DNAAF2Q9NVR5 837 aaKnown RBP23.73■■□□□ 1.39
COL9A3-213ENST00000489045 RRN3Q9NYV6 651 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.73■■□□□ 1.39
COL9A3-213ENST00000489045 VANGL2Q9ULK5 521 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 HS3ST4Q9Y661 456 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 ITIH6Q6UXX5 1313 aa23.73■■□□□ 1.39
COL9A3-213ENST00000489045 TP53BP1Q12888 1972 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-213ENST00000489045 UPK3BL1B0FP48 263 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 UPK3BL2E5RIL1 263 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 PAGE1O75459 146 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 SEMA4FO95754 770 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 TFE3P19532 575 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-213ENST00000489045 MZF1P28698 734 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-213ENST00000489045 STK19P49842 368 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-213ENST00000489045 SULT1E1P49888 294 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 IRAK1P51617 712 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 AUHQ13825 339 aaKnown RBP23.72■■□□□ 1.39
COL9A3-213ENST00000489045 C9orf64Q5T6V5 341 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 FAM102AQ5T9C2 384 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-213ENST00000489045 CXorf57Q6NSI4 855 aaKnown RBP23.72■■□□□ 1.39
COL9A3-213ENST00000489045 XYLT1Q86Y38 959 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 EPS8L1Q8TE68 723 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 PABPC3Q9H361 631 aaKnown RBP23.72■■□□□ 1.39
COL9A3-213ENST00000489045 SLCO3A1Q9UIG8 710 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 STAP1Q9ULZ2 295 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 PLXNA2O75051 1894 aa23.72■■□□□ 1.39
COL9A3-213ENST00000489045 TMEM131Q92545 1883 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 EDDM13A0A1B0GTR0 161 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 TARSL2A2RTX5 802 aaKnown RBP23.71■■□□□ 1.39
COL9A3-213ENST00000489045 BCAT2O15382 392 aaPredicted RBP23.71■■□□□ 1.39
COL9A3-213ENST00000489045 RNASEH1O60930 286 aaKnown RBP23.71■■□□□ 1.39
COL9A3-213ENST00000489045 LSM8O95777 96 aaKnown RBP23.71■■□□□ 1.39
COL9A3-213ENST00000489045 TPM2P07951 284 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 MMEP08473 750 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 SCNN1AP37088 669 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 SHC2P98077 582 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 C2CD6Q53TS8 623 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 SASS6Q6UVJ0 657 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 C1orf216Q8TAB5 229 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 ZDHHC5Q9C0B5 715 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 SIK2Q9H0K1 926 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 SGK2Q9HBY8 427 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 FANCLQ9NW38 375 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 SCML1Q9UN30 329 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 ZBTB32Q9Y2Y4 487 aaPredicted RBP23.71■■□□□ 1.39
COL9A3-213ENST00000489045 SLCO1B1Q9Y6L6 691 aa23.71■■□□□ 1.39
COL9A3-213ENST00000489045 GOLGA6L22H0YM25 854 aa23.7■■□□□ 1.38
COL9A3-213ENST00000489045 ADCY5O95622 1261 aa23.7■■□□□ 1.38
COL9A3-213ENST00000489045 CD59P13987 128 aa23.7■■□□□ 1.38
COL9A3-213ENST00000489045 OXCT1P55809 520 aa23.7■■□□□ 1.38
COL9A3-213ENST00000489045 POLR2FP61218 127 aaKnown RBP23.7■■□□□ 1.38
COL9A3-213ENST00000489045 NOMO3P69849 1222 aa23.7■■□□□ 1.38
COL9A3-213ENST00000489045 CST6Q15828 149 aa23.7■■□□□ 1.38
COL9A3-213ENST00000489045 BRMS1LQ5PSV4 323 aa23.7■■□□□ 1.38
COL9A3-213ENST00000489045 FKBP15Q5T1M5 1219 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms