RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 WDR5BQ86VZ2 330 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 PGBD3Q8N328 593 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 CCDC185Q8N715 623 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 MDGA1Q8NFP4 955 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 HMGB4Q8WW32 186 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 CENPIQ92674 756 aaPredicted RBP15.22■□□□□ 0.03
USP4-212ENST00000486549 CNPY3Q9BT09 278 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 DEF6Q9H4E7 631 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 THAP10Q9P2Z0 257 aaPredicted RBP15.22■□□□□ 0.03
USP4-212ENST00000486549 SCINQ9Y6U3 715 aa15.22■□□□□ 0.03
USP4-212ENST00000486549 AKR1B15C9JRZ8 316 aaPredicted RBP15.21■□□□□ 0.03
USP4-212ENST00000486549 E9PAM4 449 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 TIMM44O43615 452 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 FOXD2O60548 495 aaPredicted RBP15.21■□□□□ 0.03
USP4-212ENST00000486549 CNTN5O94779 1100 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 MOCS3O95396 460 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 ADRA1BP35368 520 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 CSKP41240 450 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 GFPT1Q06210 699 aaPredicted RBP15.21■□□□□ 0.03
USP4-212ENST00000486549 PITRM1Q5JRX3 1037 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 LAIR1Q6GTX8 287 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 KIAA1211LQ6NV74 962 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 ALKBH5Q6P6C2 394 aaKnown RBP15.21■□□□□ 0.03
USP4-212ENST00000486549 SERPINA13PQ6UXR4 307 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 PRR23BQ6ZRT6 265 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 KIAA0907Q7Z7F0 614 aaPredicted RBP15.21■□□□□ 0.03
USP4-212ENST00000486549 CNGA4Q8IV77 575 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 DRC7Q8IY82 874 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 LMLNQ96KR4 655 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 HAPLN3Q96S86 360 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 GABRG3Q99928 467 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 TRIM7Q9C029 511 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 THAP2Q9H0W7 228 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 MPP6Q9NZW5 540 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 KIAA1522Q9P206 1035 aaPredicted RBP15.21■□□□□ 0.03
USP4-212ENST00000486549 INTS6Q9UL03 887 aaKnown RBP15.21■□□□□ 0.03
USP4-212ENST00000486549 DOCK4Q8N1I0 1966 aa15.21■□□□□ 0.03
USP4-212ENST00000486549 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.2■□□□□ 0.02
USP4-212ENST00000486549 HRO43593 1189 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 LRP3O75074 770 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 CLDN11O75508 207 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 ATP5BP06576 529 aaKnown RBP15.2■□□□□ 0.02
USP4-212ENST00000486549 HLA-EP13747 358 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 PRKCHP24723 683 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 MZF1P28698 734 aaPredicted RBP15.2■□□□□ 0.02
USP4-212ENST00000486549 ID4P47928 161 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 CDH4P55283 916 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 TBX2Q13207 712 aaPredicted RBP15.2■□□□□ 0.02
USP4-212ENST00000486549 ZNF177Q13360 481 aaPredicted RBP15.2■□□□□ 0.02
USP4-212ENST00000486549 SIM2Q14190 667 aaPredicted RBP15.2■□□□□ 0.02
USP4-212ENST00000486549 STARD3Q14849 445 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 LPAL2Q16609 132 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 PLEKHG6Q3KR16 790 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 C5orf22Q49AR2 442 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 ALFQ53S48 1182 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 CXorf57Q6NSI4 855 aaKnown RBP15.2■□□□□ 0.02
USP4-212ENST00000486549 CEP68Q76N32 757 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 TFAP2DQ7Z6R9 452 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 ZNF683Q8IZ20 524 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 APCDD1Q8J025 514 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 ZNF366Q8N895 744 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 C1orf74Q96LT6 269 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 MAGEB5Q9BZ81 275 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 MRPL47Q9HD33 250 aaKnown RBP15.2■□□□□ 0.02
USP4-212ENST00000486549 EBF1Q9UH73 591 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 PLA2G4CQ9UP65 541 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 INVSQ9Y283 1065 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 DMDP11532 3685 aa15.2■□□□□ 0.02
USP4-212ENST00000486549 CKAP5Q14008 2032 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 A0A1W2PQF6 199 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 TMEM191CA6NGB0 347 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 NPC1O15118 1278 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 ZBTB24O43167 697 aaPredicted RBP15.19■□□□□ 0.02
USP4-212ENST00000486549 AKR1B10O60218 316 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 SYNCRIPO60506 623 aaKnown RBP15.19■□□□□ 0.02
USP4-212ENST00000486549 RPP40O75818 363 aaKnown RBP15.19■□□□□ 0.02
USP4-212ENST00000486549 EPHX1P07099 455 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 RHOCP08134 193 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 DLDP09622 509 aaKnown RBP15.19■□□□□ 0.02
USP4-212ENST00000486549 CTSOP43234 321 aaPredicted RBP15.19■□□□□ 0.02
USP4-212ENST00000486549 ZNF252P-AS1Q0IIN9 211 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 ARID5BQ14865 1188 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 E2F5Q15329 346 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 PTPRNQ16849 979 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 ACBD5Q5T8D3 534 aaPredicted RBP15.19■□□□□ 0.02
USP4-212ENST00000486549 RWDD4Q6NW29 188 aaKnown RBP15.19■□□□□ 0.02
USP4-212ENST00000486549 ERMP1Q7Z2K6 904 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 SLFN11Q7Z7L1 901 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 RASSF3Q86WH2 238 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 KIAA2013Q8IYS2 634 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 OR52K2Q8NGK3 314 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 NTAN1Q96AB6 310 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 MRFAP1L1Q96HT8 127 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 CHP1Q99653 195 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 OR12D3Q9UGF7 316 aa15.19■□□□□ 0.02
USP4-212ENST00000486549 CFAP54Q96N23 3096 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 SSU72P8A0A1W2PR75 194 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 DRGXA6NNA5 263 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 PRR5-ARHGAP8B1AHC4 643 aa15.18■□□□□ 0.02
USP4-212ENST00000486549 FAM72CH0Y354 149 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms