RNA–Protein interactions for RNA: ENST00000479307.5

RFC4-212, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,043 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-212ENST00000479307 SF3A3Q12874 501 aaKnown RBP eCLIP5.62□□□□□ -1.515e-7■■■□□ 14.8
RFC4-212ENST00000479307 LMAN2Q12907 356 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 ERCC6LQ2NKX8 1250 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 ALFQ53S48 1182 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 ZNF569Q5MCW4 686 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 SLC29A4Q7RTT9 530 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 FTSJ3Q8IY81 847 aaKnown RBP5.62□□□□□ -1.51
RFC4-212ENST00000479307 OR4N4Q8N0Y3 316 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 HMGB4Q8WW32 186 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 C3orf49Q96BT1 292 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 REXO5Q96IC2 774 aaKnown RBP5.62□□□□□ -1.51
RFC4-212ENST00000479307 PYM1Q9BRP8 204 aaKnown RBP5.62□□□□□ -1.51
RFC4-212ENST00000479307 TWSG1Q9GZX9 223 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 BRD8Q9H0E9 1235 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 TAF1DQ9H5J8 278 aaPredicted RBP5.62□□□□□ -1.51
RFC4-212ENST00000479307 ASAP1Q9ULH1 1129 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 LRRFIP2Q9Y608 721 aaKnown RBP5.62□□□□□ -1.51
RFC4-212ENST00000479307 WDR17Q8IZU2 1322 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 POLR3AO14802 1390 aaPredicted RBP5.62□□□□□ -1.51
RFC4-212ENST00000479307 DOT1LQ8TEK3 1739 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 TAF1LQ8IZX4 1826 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 SBF1O95248 1867 aa5.62□□□□□ -1.51
RFC4-212ENST00000479307 FNDC1Q4ZHG4 1894 aaPredicted RBP5.62□□□□□ -1.51
RFC4-212ENST00000479307 KIF28PB7ZC32 967 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 CA12O43570 354 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 GCP02774 474 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 TK1P04183 234 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 ELFN1P0C7U0 828 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 KRT4P19013 534 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 POLR2AP24928 1970 aaKnown RBP5.61□□□□□ -1.51
RFC4-212ENST00000479307 SERPINA4P29622 427 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 IGHMBP2P38935 993 aaKnown RBP5.61□□□□□ -1.51
RFC4-212ENST00000479307 PRKAA2P54646 552 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 ACTR2P61160 394 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 PSG6Q00889 435 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 TAF12Q16514 161 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 FAM187BQ17R55 369 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 AAK1Q2M2I8 961 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 PCID2Q5JVF3 399 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 ACSM6Q6P461 480 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 PPIP5K1Q6PFW1 1433 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 KIRREL2Q6UWL6 708 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 TOM1L2Q6ZVM7 507 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 SUGP1Q8IWZ8 645 aaKnown RBP5.61□□□□□ -1.51
RFC4-212ENST00000479307 LINC01465Q8N7H1 131 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 C12orf76Q8N812 135 aaPredicted RBP5.61□□□□□ -1.51
RFC4-212ENST00000479307 FAM71DQ8N9W8 422 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 OR52L2PQ8NGH6 319 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 CAGE1Q8TC20 777 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 GLMPQ8WWB7 406 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 UBXN10Q96LJ8 280 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 TBATAQ96M53 351 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 BBC3Q96PG8 261 aaPredicted RBP5.61□□□□□ -1.51
RFC4-212ENST00000479307 SNX18Q96RF0 628 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 TIMP4Q99727 224 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 SALL3Q9BXA9 1300 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 RNF26Q9BY78 433 aaPredicted RBP5.61□□□□□ -1.51
RFC4-212ENST00000479307 THSD7BQ9C0I4 1608 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 CCDC134Q9H6E4 229 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 G6PC2Q9NQR9 355 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 RASSF1Q9NS23 344 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 SAGE1Q9NXZ1 904 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 GAR1Q9NY12 217 aaKnown RBP5.61□□□□□ -1.51
RFC4-212ENST00000479307 SLC17A6Q9P2U8 582 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 FEM1BQ9UK73 627 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 HS3ST3A1Q9Y663 406 aa5.61□□□□□ -1.51
RFC4-212ENST00000479307 SZT2Q5T011 3432 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 ADGRB1O14514 1584 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 SPATA31E1Q6ZUB1 1445 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 CNTNAP1P78357 1384 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 SLC38A8A6NNN8 435 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 NKX2-8O15522 239 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 SUV39H1O43463 412 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 TFRCP02786 760 aaKnown RBP5.6□□□□□ -1.51
RFC4-212ENST00000479307 WT1P19544 449 aaPredicted RBP5.6□□□□□ -1.51
RFC4-212ENST00000479307 ITPKBP27987 946 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 DUSP1P28562 367 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 CXCR5P32302 372 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 MAPK9P45984 424 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 CACNA2D1P54289 1103 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 CFHR3Q02985 330 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 SMAD1Q15797 465 aaKnown RBP5.6□□□□□ -1.51
RFC4-212ENST00000479307 RNASE12Q5GAN4 147 aaKnown RBP5.6□□□□□ -1.51
RFC4-212ENST00000479307 DGAT2L7PQ6IED9 249 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 CEP85Q6P2H3 762 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 DBX2Q6ZNG2 339 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 C2CD5Q86YS7 1000 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 Q8N1X5 172 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 NPIPB3Q92617 1050 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 USP13Q92995 863 aaPredicted RBP5.6□□□□□ -1.51
RFC4-212ENST00000479307 EDC3Q96F86 508 aaKnown RBP5.6□□□□□ -1.51
RFC4-212ENST00000479307 PRAM1Q96QH2 718 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 SAP30LQ9HAJ7 183 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 VPS45Q9NRW7 570 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 RRN3Q9NYV6 651 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 GJD2Q9UKL4 321 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 ST3GAL5Q9UNP4 418 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 UBR3Q6ZT12 1888 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 TIAM2Q8IVF5 1701 aa5.6□□□□□ -1.51
RFC4-212ENST00000479307 CCDC7Q96M83 1385 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms