RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 CDH4P55283 916 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 SPEM2Q0P670 501 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 ENPP2Q13822 863 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 TSR1Q2NL82 804 aaKnown RBP14.65□□□□□ -0.06
VAMP4-203ENST00000474047 PLK5Q496M5 336 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 SH3PXD2AQ5TCZ1 1133 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 E4F1Q66K89 784 aaPredicted RBP14.65□□□□□ -0.06
VAMP4-203ENST00000474047 SCYL2Q6P3W7 929 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 LPCAT2Q7L5N7 544 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 STRADAQ7RTN6 431 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 PRCCQ92733 491 aaPredicted RBP14.65□□□□□ -0.06
VAMP4-203ENST00000474047 TTC17Q96AE7 1141 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 LOXL4Q96JB6 756 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 ZC3H10Q96K80 434 aaKnown RBP14.65□□□□□ -0.06
VAMP4-203ENST00000474047 SYT11Q9BT88 431 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 TMPRSS4Q9NRS4 437 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 EML5Q05BV3 1969 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 E9PAM4 449 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 RTN2O75298 545 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 ENDOD1O94919 500 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 SERPING1P05155 500 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 CASP14P31944 242 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 ADRA1BP35368 520 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 P2RY2P41231 377 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 ECT2LQ008S8 904 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 PLEKHG6Q3KR16 790 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 TMPRSS6Q8IU80 811 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 APCDD1Q8J025 514 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 ZNF366Q8N895 744 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 OLIG1Q8TAK6 271 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 TRIM11Q96F44 468 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 SIPA1Q96FS4 1042 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 LMLNQ96KR4 655 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 MRGPRX1Q96LB2 322 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 MUC3BQ9H195 1237 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 DUSP15Q9H1R2 295 aaPredicted RBP14.64□□□□□ -0.07
VAMP4-203ENST00000474047 SLC6A17Q9H1V8 727 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 ANLNQ9NQW6 1124 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 INTS6Q9UL03 887 aaKnown RBP14.64□□□□□ -0.07
VAMP4-203ENST00000474047 ERVW-1Q9UQF0 538 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 FAM186AA6NE01 2351 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 ITIH6Q6UXX5 1313 aa14.64□□□□□ -0.07
VAMP4-203ENST00000474047 DDX3XO00571 662 aaKnown RBP eCLIP14.63□□□□□ -0.078e-6■■■■□ 25.2
VAMP4-203ENST00000474047 NDUFS2O75306 463 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 RHOCP08134 193 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 SRPRAP08240 638 aaKnown RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 DHPSP49366 369 aaPredicted RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 NUMBP49757 651 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 ZNF143P52747 638 aaPredicted RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 RPL7AP62424 266 aaKnown RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 SULT2A1Q06520 285 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 TRIM14Q14142 442 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 PTPRNQ16849 979 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 SPECC1LQ69YQ0 1117 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 SLC36A4Q6YBV0 504 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 ZNF653Q96CK0 615 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 ARRDC1-AS1Q9H2J1 176 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 TMEM245Q9H330 911 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 ZNHIT6Q9NWK9 470 aaKnown RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 OR12D3Q9UGF7 316 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 ADAMTS1Q9UHI8 967 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 VPS28Q9UK41 221 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 CYP8B1Q9UNU6 501 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 SPAG17Q6Q759 2223 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 SDK1Q7Z5N4 2213 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 ATMINO43313 823 aaPredicted RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 CNTN5O94779 1100 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 GYPCP04921 128 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 BCKDHBP21953 392 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 MZF1P28698 734 aaPredicted RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 OR1E1P30953 314 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 IRAK1P51617 712 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 CREB5Q02930 508 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 MAP7D1Q3KQU3 841 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 C5orf22Q49AR2 442 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 RAB6CQ53S08 254 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 RWDD4Q6NW29 188 aaKnown RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 BNIPLQ7Z465 357 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 TFAP2DQ7Z6R9 452 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 SLFN11Q7Z7L1 901 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 CACUL1Q86Y37 369 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 FRMD1Q8N878 549 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 OR2T3Q8NH03 318 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 CENPIQ92674 756 aaPredicted RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 RPL10LQ96L21 214 aaKnown RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 CNPY3Q9BT09 278 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 RAB6CQ9H0N0 254 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 MPP6Q9NZW5 540 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 MYO1AQ9UBC5 1043 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 CNOT8Q9UFF9 292 aaKnown RBP14.63□□□□□ -0.07
VAMP4-203ENST00000474047 SLC25A13Q9UJS0 675 aa14.63□□□□□ -0.07
VAMP4-203ENST00000474047 RALGAPA1Q6GYQ0 2036 aa14.62□□□□□ -0.07
VAMP4-203ENST00000474047 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.62□□□□□ -0.07
VAMP4-203ENST00000474047 I6L893 689 aaPredicted RBP14.62□□□□□ -0.07
VAMP4-203ENST00000474047 AP5Z1O43299 807 aa14.62□□□□□ -0.07
VAMP4-203ENST00000474047 CCP110O43303 1012 aa14.62□□□□□ -0.07
VAMP4-203ENST00000474047 RNASEH1O60930 286 aaKnown RBP14.62□□□□□ -0.07
VAMP4-203ENST00000474047 LRP3O75074 770 aa14.62□□□□□ -0.07
VAMP4-203ENST00000474047 MYBL1P10243 752 aa14.62□□□□□ -0.07
VAMP4-203ENST00000474047 PSMA2P25787 234 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms