RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PNPLA6Q8IY17 1366 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 EGFRP00533 1210 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 EPHB2P29323 1055 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ATF7IP2Q5U623 682 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ADCK2Q7Z695 626 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 H3BN98 237 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 TDP2O95551 362 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 CPB1P15086 417 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 PTX3P26022 381 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-209ENST00000472056 GSTM5P46439 218 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 YWHAZP63104 245 aaKnown RBP13.56□□□□□ -0.24
COL6A3-209ENST00000472056 TBC1D21Q8IYX1 336 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 TMCO6Q96DC7 493 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 MMP19Q99542 508 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 SMURF2Q9HAU4 748 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF112Q9UJU3 913 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 AGAP1Q9UPQ3 857 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 LSM1O15116 133 aaKnown RBP13.55□□□□□ -0.24
COL6A3-209ENST00000472056 VAV1P15498 845 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 ITGB6P18564 788 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 HS6ST3Q8IZP7 471 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 PANX3Q96QZ0 392 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 TRMOQ9BU70 441 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 DPY30Q9C005 99 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 THAP2Q9H0W7 228 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 ALKQ9UM73 1620 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 ZSWIM7Q19AV6 140 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 RNF145Q96MT1 663 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 DCUN1D5Q9BTE7 237 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 CHST10O43529 356 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 NPTXRO95502 500 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 CCNE2O96020 404 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 VDRP11473 427 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 GRIK3Q13003 919 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 EMC2Q15006 297 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 STRIP1Q5VSL9 837 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 MTMR4Q9NYA4 1195 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 HPSEQ9Y251 543 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 V9GYQ6 96 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 CDH4P55283 916 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF549Q6P9A3 640 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 PIWIL4Q7Z3Z4 852 aaKnown RBP13.55□□□□□ -0.24
COL6A3-209ENST00000472056 DPF2Q92785 391 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 STOX2Q9P2F5 926 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-209ENST00000472056 YWHAQP27348 245 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 DENND5AQ6IQ26 1287 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 FNDC5Q8NAU1 212 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 SCUBE2Q9NQ36 999 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 TARBP1Q13395 1621 aaKnown RBP13.55□□□□□ -0.24
COL6A3-209ENST00000472056 C2CD2LO14523 706 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 RPL14P50914 215 aaKnown RBP13.55□□□□□ -0.24
COL6A3-209ENST00000472056 MFSD14CQ5VZR4 134 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 PLET1Q6UQ28 207 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF276Q8N554 614 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 TCP10LQ8TDR4 215 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 FAM49BQ9NUQ9 324 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 MYL9P24844 172 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 KCNJ1P48048 391 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 ERFEQ4G0M1 354 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 TCEAL5Q5H9L2 206 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 C16orf86Q6ZW13 317 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 PEX5LQ8IYB4 626 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 SRBD1Q8N5C6 995 aaKnown RBP13.55□□□□□ -0.24
COL6A3-209ENST00000472056 BTBD9Q96Q07 612 aa13.55□□□□□ -0.24
COL6A3-209ENST00000472056 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.55□□□□□ -0.24
COL6A3-209ENST00000472056 SERPINA1P01009 418 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 FOSL2P15408 326 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 FUT11Q495W5 492 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 TTI2Q6NXR4 508 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 FBXW8Q8N3Y1 598 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 FBXO39Q8N4B4 442 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 C15orf40Q8WUR7 153 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 EEF1AKMT1Q8WVE0 214 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 HPS1Q92902 700 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 CD101Q93033 1021 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 NLNQ9BYT8 704 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 PTTG2Q9NZH5 202 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 ATPIF1Q9UII2 106 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 LOC110117498-PIK3R3F6TDL0 507 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 PRMT5O14744 637 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 CCR3P51677 355 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 OVGP1Q12889 678 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 PAGE2BQ5JRK9 111 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 EMC1Q8N766 993 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 GIPC3Q8TF64 312 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 PIK3R3Q92569 461 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 MINPP1Q9UNW1 487 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 INVSQ9Y283 1065 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 TRAFD1O14545 582 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 SNX3O60493 162 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 SERPIND1P05546 499 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 RPL26P61254 145 aaKnown RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 SMTNL2Q2TAL5 461 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 MTF2Q9Y483 593 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 FMN2Q9NZ56 1722 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 GTF2E2P29084 291 aaKnown RBP13.54□□□□□ -0.24
COL6A3-209ENST00000472056 GPR15P49685 360 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 KATNAL2Q8IYT4 538 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 HM13Q8TCT9 377 aa13.54□□□□□ -0.24
COL6A3-209ENST00000472056 CHST12Q9NRB3 414 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms