RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 MIR1-1HGQ9H1L0 117 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 PABPC3Q9H361 631 aaKnown RBP16.84■□□□□ 0.29
COL9A3-208ENST00000469802 OSGEPQ9NPF4 335 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 SAMSN1Q9NSI8 373 aaKnown RBP16.84■□□□□ 0.29
COL9A3-208ENST00000469802 SCML1Q9UN30 329 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 FHOD1Q9Y613 1164 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 KNL1Q8NG31 2342 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 MOCS3O95396 460 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 TOP3BO95985 862 aaKnown RBP16.83■□□□□ 0.28
COL9A3-208ENST00000469802 ABCB4P21439 1286 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 KRT9P35527 623 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 PLK1P53350 603 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 ECT2LQ008S8 904 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 SLC6A3Q01959 620 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 MTA1Q13330 715 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 SLC12A1Q13621 1099 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 KCNJ12Q14500 433 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 DRAP1Q14919 205 aaPredicted RBP16.83■□□□□ 0.28
COL9A3-208ENST00000469802 C9orf64Q5T6V5 341 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 KLHDC7AQ5VTJ3 777 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 OR6B2Q6IFH4 312 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 CXorf57Q6NSI4 855 aaKnown RBP16.83■□□□□ 0.28
COL9A3-208ENST00000469802 FBXL22Q6P050 247 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 CIR1Q86X95 450 aaPredicted RBP16.83■□□□□ 0.28
COL9A3-208ENST00000469802 ZDHHC17Q8IUH5 632 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 ASPMQ8IZT6 3477 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 ORAI3Q9BRQ5 295 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 TMEM121BQ9BXQ6 578 aaPredicted RBP16.83■□□□□ 0.28
COL9A3-208ENST00000469802 BTBD1Q9H0C5 482 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 SGK2Q9HBY8 427 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 PLCB1Q9NQ66 1216 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 LMBRD1Q9NUN5 540 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 SLC12A6Q9UHW9 1150 aa16.83■□□□□ 0.28
COL9A3-208ENST00000469802 IGF2RP11717 2491 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 PTPRBP23467 1997 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 CHD5Q8TDI0 1954 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 EDDM13A0A1B0GTR0 161 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 SPAARA0A1B0GVQ0 90 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 TARSL2A2RTX5 802 aaKnown RBP16.82■□□□□ 0.28
COL9A3-208ENST00000469802 TTC34A8MYJ7 566 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 ZNF883P0CG24 379 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 CYP11B1P15538 503 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 EEF1GP26641 437 aaKnown RBP16.82■□□□□ 0.28
COL9A3-208ENST00000469802 NOS2P35228 1153 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 SCNN1AP37088 669 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 MATKP42679 507 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 GABRB2P47870 512 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 IRAK1P51617 712 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 SNX16P57768 344 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 BPIFB4P59827 614 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 FAM193AP78312 1265 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 CENPCQ03188 943 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 HNRNPDQ14103 355 aaKnown RBP16.82■□□□□ 0.28
COL9A3-208ENST00000469802 CST6Q15828 149 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 C5orf22Q49AR2 442 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 TCP11X2Q5H9J9 407 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 RABGAP1LQ5R372 815 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 DHX40Q8IX18 779 aaKnown RBP16.82■□□□□ 0.28
COL9A3-208ENST00000469802 NT5C3BQ969T7 300 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 BIRC7Q96CA5 298 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 NPY6RQ99463 290 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 SERGEFQ9UGK8 458 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 ADAMTS1Q9UHI8 967 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 SLCO3A1Q9UIG8 710 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 CEP83Q9Y592 693 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 CABIN1Q9Y6J0 2220 aa16.82■□□□□ 0.28
COL9A3-208ENST00000469802 SYNJ2BP-COX16A0A087WUM0 186 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 I6L893 689 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-208ENST00000469802 CER1O95813 267 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 IGHV4-34P06331 123 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 UCHL3P15374 230 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 STK19P49842 368 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-208ENST00000469802 VASPP50552 380 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-208ENST00000469802 AFF3P51826 1226 aaKnown RBP16.81■□□□□ 0.28
COL9A3-208ENST00000469802 SIM1P81133 766 aaPredicted RBP16.81■□□□□ 0.28
COL9A3-208ENST00000469802 AUHQ13825 339 aaKnown RBP16.81■□□□□ 0.28
COL9A3-208ENST00000469802 RAPGEF1Q13905 1077 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 RBM43Q6ZSC3 357 aaKnown RBP16.81■□□□□ 0.28
COL9A3-208ENST00000469802 NAXDQ8IW45 347 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 TMEM35BQ8NCS4 154 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 SNX19Q92543 992 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 PTPRN2Q92932 1015 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 IGSF8Q969P0 613 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 ALG14Q96F25 216 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 SYNCQ9H7C4 482 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 IL21RQ9HBE5 538 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 PIGVQ9NUD9 493 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 RRN3Q9NYV6 651 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 COX16Q9P0S2 106 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 FZD4Q9ULV1 537 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 FNDC3AQ9Y2H6 1198 aaKnown RBP16.81■□□□□ 0.28
COL9A3-208ENST00000469802 HS3ST4Q9Y661 456 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 WDFY3Q8IZQ1 3526 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 DOCK9Q9BZ29 2069 aa16.81■□□□□ 0.28
COL9A3-208ENST00000469802 SPEGQ15772 3267 aa16.8■□□□□ 0.28
COL9A3-208ENST00000469802 F8VZ95 297 aa16.8■□□□□ 0.28
COL9A3-208ENST00000469802 M0QYT0 321 aa16.8■□□□□ 0.28
COL9A3-208ENST00000469802 MID1O15344 667 aa16.8■□□□□ 0.28
COL9A3-208ENST00000469802 SH3BP5O60239 455 aa16.8■□□□□ 0.28
COL9A3-208ENST00000469802 RNASEH1O60930 286 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms