RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ELF1P32519 619 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 NUMBP49757 651 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 STX3Q13277 289 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 KPNB1Q14974 876 aaKnown RBP19.58■□□□□ 0.72
VIM-203ENST00000469543 PCBP1Q15365 356 aaKnown RBP eCLIP19.58■□□□□ 0.723e-21■■□□□ 13.3
VIM-203ENST00000469543 TAF1CQ15572 869 aaPredicted RBP19.58■□□□□ 0.72
VIM-203ENST00000469543 HSP90AA5PQ58FG0 334 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 AGMOQ6ZNB7 445 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 ARHGAP36Q6ZRI8 547 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 C10orf107Q8IVU9 208 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 PPP1R14CQ8TAE6 165 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 KCTD13Q8WZ19 329 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 MTBPQ96DY7 904 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 SIK2Q9H0K1 926 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 TMLHEQ9NVH6 421 aa19.58■□□□□ 0.72
VIM-203ENST00000469543 CALB2P22676 271 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 PAFAH1B3Q15102 231 aaKnown RBP19.57■□□□□ 0.72
VIM-203ENST00000469543 STEAP4Q687X5 459 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 C4orf22Q6V702 233 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 RASSF3Q86WH2 238 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 TRPV1Q8NER1 839 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 C7orf26Q96N11 449 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 SHCBP1LQ9BZQ2 653 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 RRAGCQ9HB90 399 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 B2RBV5 119 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 SNNO75324 88 aaPredicted RBP19.57■□□□□ 0.72
VIM-203ENST00000469543 PGAM1P18669 254 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 TYK2P29597 1187 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 HUNKP57058 714 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 BHLHA9Q7RTU4 235 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 AGR3Q8TD06 166 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 DTX3LQ8TDB6 740 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 ATP2A3Q93084 1043 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 ZNF669Q96BR6 464 aaPredicted RBP19.57■□□□□ 0.72
VIM-203ENST00000469543 FBXW11Q9UKB1 542 aa19.57■□□□□ 0.72
VIM-203ENST00000469543 HBS1LQ9Y450 684 aaKnown RBP19.57■□□□□ 0.72
VIM-203ENST00000469543 PRR5-ARHGAP8B1AHC4 643 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 DNAJC6O75061 913 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 B3GAT3O94766 335 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 UPP2O95045 317 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 ITGB1P05556 798 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 ARHGAP8P85298 464 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 ATG16L1Q676U5 607 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 MBLAC2Q68D91 279 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 BZW1Q7L1Q6 419 aaKnown RBP19.56■□□□□ 0.72
VIM-203ENST00000469543 OTOP3Q7RTS5 596 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 KDELC2Q7Z4H8 507 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 ZNF419Q96HQ0 510 aaPredicted RBP19.56■□□□□ 0.72
VIM-203ENST00000469543 RTP3Q9BQQ7 232 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 MLPHQ9BV36 600 aaPredicted RBP19.56■□□□□ 0.72
VIM-203ENST00000469543 WDCPQ9H6R7 721 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 TLE6Q9H808 572 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 PNPOQ9NVS9 261 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 HHLA1C9JL84 531 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 PPP1R12AO14974 1030 aaPredicted RBP19.56■□□□□ 0.72
VIM-203ENST00000469543 STK10O94804 968 aaKnown RBP19.56■□□□□ 0.72
VIM-203ENST00000469543 LRIG2O94898 1065 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 LTFP02788 710 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 FGF3P11487 239 aaPredicted RBP19.56■□□□□ 0.72
VIM-203ENST00000469543 GNAZP19086 355 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 IRF9Q00978 393 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 ACSBG2Q5FVE4 666 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 LRRTM3Q86VH5 581 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 CRLF3Q8IUI8 442 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 CERS2Q96G23 380 aa19.56■□□□□ 0.72
VIM-203ENST00000469543 RCOR3Q9P2K3 495 aaPredicted RBP19.56■□□□□ 0.72
VIM-203ENST00000469543 JCHAINP01591 159 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 POLBP06746 335 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 GSTA2P09210 222 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 NFKB1P19838 968 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 SAT1P21673 171 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 SEMA3BQ13214 749 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 PCLAFQ15004 111 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 TRIM68Q6AZZ1 485 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 MARK2Q7KZI7 788 aaKnown RBP19.55■□□□□ 0.72
VIM-203ENST00000469543 RSPH3Q86UC2 560 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 SPATA22Q8NHS9 363 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 VANGL2Q9ULK5 521 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 DNAJC16Q9Y2G8 782 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 INPP5FQ9Y2H2 1132 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 CAPN14A8MX76 684 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 MLNP12872 115 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 SERPINB9P50453 376 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 MRPS6P82932 125 aaKnown RBP19.55■□□□□ 0.72
VIM-203ENST00000469543 RWDD4Q6NW29 188 aaKnown RBP19.55■□□□□ 0.72
VIM-203ENST00000469543 PNPLA1Q8N8W4 532 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 CDKL2Q92772 493 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 MCUR1Q96AQ8 359 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 FAM167BQ9BTA0 163 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 KCNK4Q9NYG8 393 aa19.55■□□□□ 0.72
VIM-203ENST00000469543 MGEA5O60502 916 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 PLIN3O60664 434 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 KRT36O76013 467 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 PTDSS1P48651 473 aaKnown RBP19.54■□□□□ 0.72
VIM-203ENST00000469543 TEDDM1Q5T9Z0 273 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 FSTL4Q6MZW2 842 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 MAVSQ7Z434 540 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 STRA8Q7Z7C7 330 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 DCLK2Q8N568 766 aa19.54■□□□□ 0.72
VIM-203ENST00000469543 RBM15BQ8NDT2 890 aaKnown RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms