RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 BNIP3Q12983 259 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 PDAP1Q13442 181 aaKnown RBP11.98□□□□□ -0.49
CPSF3-202ENST00000460593 TRPC3Q13507 836 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 ART3Q13508 389 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 IKBKEQ14164 716 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 GK5Q6ZS86 529 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 ZNF786Q8N393 782 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 PPP1R10Q96QC0 940 aaKnown RBP11.98□□□□□ -0.49
CPSF3-202ENST00000460593 NIF3L1Q9GZT8 377 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 COQ6Q9Y2Z9 468 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.98□□□□□ -0.49
CPSF3-202ENST00000460593 SAC3D1A6NKF1 404 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 H3BNH8 94 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 M0QYV0 167 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 VAPBO95292 243 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 ME2P23368 584 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 ALDH3B2P48448 385 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 TAP1Q03518 808 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 EMC2Q15006 297 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 ZNF699Q32M78 642 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 USP41Q3LFD5 358 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 FGD3Q5JSP0 725 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 GPR107Q5VW38 600 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 OR6B2Q6IFH4 312 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 BORAQ6PGQ7 559 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 SLC15A3Q8IY34 581 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 FIBCD1Q8N539 461 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 DCPSQ96C86 337 aaKnown RBP11.98□□□□□ -0.49
CPSF3-202ENST00000460593 RMND5BQ96G75 393 aaPredicted RBP11.98□□□□□ -0.49
CPSF3-202ENST00000460593 SERPINI1Q99574 410 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 APBA2Q99767 749 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 MOCS1Q9NZB8 636 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 THEGQ9P2T0 379 aa11.98□□□□□ -0.49
CPSF3-202ENST00000460593 KANSL1LA0AUZ9 987 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 RBM47A0AV96 593 aaKnown RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 FUOMA2VDF0 154 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 FAM149AA5PLN7 773 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 APOL1O14791 398 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 FAM189A1O60320 539 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 USP12O75317 370 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 TIPRLO75663 272 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 ATP5BP06576 529 aaKnown RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 SOX11P35716 441 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 CAP2P40123 477 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 ASPAP45381 313 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 PHKA2P46019 1235 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 HARS2P49590 506 aaKnown RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 JAK3P52333 1124 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 ZNF362Q5T0B9 420 aaPredicted RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 TREML2Q5T2D2 321 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 ARHGEF16Q5VV41 709 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 TRIM50Q86XT4 487 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 PPWD1Q96BP3 646 aaKnown RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 AGAP3Q96P47 875 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 AGAP2Q99490 1192 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 HAUS8Q9BT25 410 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 DHX33Q9H6R0 707 aaKnown RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 SNX15Q9NRS6 342 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 MTMR10Q9NXD2 777 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 MYRFQ9Y2G1 1151 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 COL16A1Q07092 1604 aaPredicted RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 RGSL1A5PLK6 1076 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 PRPSAP2O60256 369 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 TPST1O60507 370 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 OCM2P0CE71 109 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 OCMP0CE72 109 aaPredicted RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 GLDCP23378 1020 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 POLR2BP30876 1174 aaKnown RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 HOXD12P35452 270 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 GRM5P41594 1212 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 SERPINB9P50453 376 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 YWHAEP62258 255 aaKnown RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 IGBP1P78318 339 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 NANOGP8Q6NSW7 305 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 C16orf89Q6UX73 402 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 SPATA6LQ8N4H0 392 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 DCLK2Q8N568 766 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 WNK4Q96J92 1243 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 CORO1BQ9BR76 489 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 PDCD2LQ9BRP1 358 aa11.97□□□□□ -0.49
CPSF3-202ENST00000460593 GATA5Q9BWX5 397 aaPredicted RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 FRMD8P1Q9BZ68 369 aaPredicted RBP11.97□□□□□ -0.49
CPSF3-202ENST00000460593 KCNU1A8MYU2 1149 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 TK2O00142 265 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 ACOT8O14734 319 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 DGAT1O75907 488 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 ICAM1P05362 532 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 GABRB3P28472 473 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 YAP1P46937 504 aaKnown RBP11.96□□□□□ -0.49
CPSF3-202ENST00000460593 PHEXP78562 749 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 NME3Q13232 169 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 TMEM53Q6P2H8 277 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 TMEM26Q6ZUK4 368 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 GPR141Q7Z602 305 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.96□□□□□ -0.49
CPSF3-202ENST00000460593 THAP11Q96EK4 314 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 STN1Q9H668 368 aaKnown RBP11.96□□□□□ -0.49
CPSF3-202ENST00000460593 PCDHB12Q9Y5F1 795 aa11.96□□□□□ -0.49
CPSF3-202ENST00000460593 SOCS2O14508 198 aa11.96□□□□□ -0.5
CPSF3-202ENST00000460593 ACAT1P24752 427 aaKnown RBP11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms