RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 ZNF358Q9NW07 568 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 MCM3APO60318 1980 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 H2AFYO75367 372 aaKnown RBP19.54■□□□□ 0.72
SDCBP-204ENST00000447182 VTNP04004 478 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 GLDCP23378 1020 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 MLH1P40692 756 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 LIMK2P53671 638 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 MMEL1Q495T6 779 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 ANKRD20A4Q4UJ75 823 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 CLEC14AQ86T13 490 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 LRRC52Q8N7C0 313 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 ZNF781Q8N8C0 355 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 PGBD4Q96DM1 585 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 EPB41L1Q9H4G0 881 aa19.54■□□□□ 0.72
SDCBP-204ENST00000447182 RALGAPA2Q2PPJ7 1873 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 G3V2L1 256 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 PPEF2O14830 753 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 MPOP05164 745 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 MATKP42679 507 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 USP4Q13107 963 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 TTLL4Q14679 1199 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 BSPRYQ5W0U4 402 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 CMC1Q7Z7K0 106 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 ZNF567Q8N184 647 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 OR6B3Q8NGW1 331 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 TRPM4Q8TD43 1214 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 HSFY1Q96LI6 401 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 FCRL3Q96P31 734 aaPredicted RBP19.53■□□□□ 0.72
SDCBP-204ENST00000447182 LRRC40Q9H9A6 602 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 C6orf203Q9P0P8 240 aaPredicted RBP19.53■□□□□ 0.72
SDCBP-204ENST00000447182 STK39Q9UEW8 545 aa19.53■□□□□ 0.72
SDCBP-204ENST00000447182 PRPF19Q9UMS4 504 aaKnown RBP19.53■□□□□ 0.72
SDCBP-204ENST00000447182 KPNA7A9QM74 516 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 ZNF189O75820 626 aaPredicted RBP19.52■□□□□ 0.72
SDCBP-204ENST00000447182 HSPA4LO95757 839 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 LCP1P13796 627 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 SH3BGRP55822 239 aaPredicted RBP19.52■□□□□ 0.72
SDCBP-204ENST00000447182 BIRC2Q13490 618 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 PDK3Q15120 406 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 SLC25A52Q3SY17 297 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 SLC9B1Q4ZJI4 515 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 UGT2A3Q6UWM9 527 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 NAPRTQ6XQN6 538 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 PLD6Q8N2A8 252 aaKnown RBP19.52■□□□□ 0.72
SDCBP-204ENST00000447182 SLC7A14Q8TBB6 771 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 SREK1Q8WXA9 508 aaKnown RBP19.52■□□□□ 0.72
SDCBP-204ENST00000447182 CNDP1Q96KN2 507 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 DPEP3Q9H4B8 488 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 PSMD13Q9UNM6 376 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 IRF6O14896 467 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 CHN2P52757 468 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 PEX6Q13608 980 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 PAFAH1B3Q15102 231 aaKnown RBP19.52■□□□□ 0.72
SDCBP-204ENST00000447182 ZBTB6Q15916 424 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 FSTL4Q6MZW2 842 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 TMEM135Q86UB9 458 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 FAM131BQ86XD5 332 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 TNS4Q8IZW8 715 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 CRYBG2Q8N1P7 616 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 C7orf31Q8N865 590 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 ICA1LQ8NDH6 482 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 RNF139Q8WU17 664 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 LPIN3Q9BQK8 851 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 OXCT2Q9BYC2 517 aaPredicted RBP19.52■□□□□ 0.72
SDCBP-204ENST00000447182 NDUFA13Q9P0J0 144 aa19.52■□□□□ 0.72
SDCBP-204ENST00000447182 SMIM31A0A1B0GVY4 71 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 E9PBE3 544 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 KLHL41O60662 606 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 TRIM13O60858 407 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 CAPN15O75808 1086 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 LGALS2P05162 132 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 GMPRP36959 345 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 GRIA2P42262 883 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 IFRD2Q12894 506 aaPredicted RBP19.51■□□□□ 0.71
SDCBP-204ENST00000447182 DCAF4L1Q3SXM0 396 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 CES3Q6UWW8 571 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 TMEM126BQ8IUX1 230 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 PQLC1Q8N2U9 271 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.51■□□□□ 0.71
SDCBP-204ENST00000447182 MAPK15Q8TD08 544 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 NLRP7Q8WX94 980 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 STON2Q8WXE9 905 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 ZMAT2Q96NC0 199 aaKnown RBP19.51■□□□□ 0.71
SDCBP-204ENST00000447182 PRDM12Q9H4Q4 367 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 TCF7L2Q9NQB0 619 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 MAN1C1Q9NR34 630 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 COL1A2P08123 1366 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 BRCA1P38398 1863 aaKnown RBP19.51■□□□□ 0.71
SDCBP-204ENST00000447182 SLC22A2O15244 555 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 DENRO43583 198 aaKnown RBP19.51■□□□□ 0.71
SDCBP-204ENST00000447182 ZMPSTE24O75844 475 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 THRAP10827 490 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 FOLH1Q04609 750 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 SNAPC2Q13487 334 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 GADL1Q6ZQY3 521 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 STRA8Q7Z7C7 330 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 MARVELD2Q8N4S9 558 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 TDRD5Q8NAT2 981 aaKnown RBP19.51■□□□□ 0.71
SDCBP-204ENST00000447182 HIPK4Q8NE63 616 aa19.51■□□□□ 0.71
SDCBP-204ENST00000447182 LENG8Q96PV6 779 aaPredicted RBP19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms