RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 FRMD1Q8N878 549 aa8.05□□□□□ -1.12
CD44-211ENST00000442151 C1orf131Q8NDD1 294 aaKnown RBP8.05□□□□□ -1.12
CD44-211ENST00000442151 DQX1Q8TE96 717 aaKnown RBP8.05□□□□□ -1.12
CD44-211ENST00000442151 NDRG1Q92597 394 aaKnown RBP8.05□□□□□ -1.12
CD44-211ENST00000442151 CCDC114Q96M63 670 aa8.05□□□□□ -1.12
CD44-211ENST00000442151 OMDQ99983 421 aa8.05□□□□□ -1.12
CD44-211ENST00000442151 KRTAP4-8Q9BYQ9 185 aa8.05□□□□□ -1.12
CD44-211ENST00000442151 SYNCQ9H7C4 482 aa8.05□□□□□ -1.12
CD44-211ENST00000442151 APEX2Q9UBZ4 518 aa8.05□□□□□ -1.12
CD44-211ENST00000442151 ATXN2Q99700 1313 aaKnown RBP8.05□□□□□ -1.12
CD44-211ENST00000442151 NCOR2Q9Y618 2525 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 ANTXRLA6NF34 631 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 FLRT2O43155 660 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 HSF2BPO75031 334 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 LUC7L3O95232 432 aaKnown RBP8.04□□□□□ -1.12
CD44-211ENST00000442151 ADH1BP00325 375 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 CD27P26842 260 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 COPAP53621 1224 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 RPS14P62263 151 aaKnown RBP8.04□□□□□ -1.12
CD44-211ENST00000442151 ECT2LQ008S8 904 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 MAN2A1Q16706 1144 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 HNRNPA1L2Q32P51 320 aaKnown RBP8.04□□□□□ -1.12
CD44-211ENST00000442151 XP32Q5T750 250 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 UNQ6494/PRO21346Q6UXR6 183 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 C11orf57Q6ZUT1 292 aaPredicted RBP8.04□□□□□ -1.12
CD44-211ENST00000442151 ADIPOR2Q86V24 386 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 CHSY1Q86X52 802 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 OXR1Q8N573 874 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 KDF1Q8NAX2 398 aaPredicted RBP8.04□□□□□ -1.12
CD44-211ENST00000442151 SETD7Q8WTS6 366 aaKnown RBP8.04□□□□□ -1.12
CD44-211ENST00000442151 SNX19Q92543 992 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 ERCC4Q92889 916 aaPredicted RBP8.04□□□□□ -1.12
CD44-211ENST00000442151 SLC39A13Q96H72 371 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 PPP1R13BQ96KQ4 1090 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 MKRN2Q9H000 416 aaKnown RBP8.04□□□□□ -1.12
CD44-211ENST00000442151 KDM4CQ9H3R0 1056 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 PRSS16Q9NQE7 514 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 SLC25A13Q9UJS0 675 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 FZD4Q9ULV1 537 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 PCDHGC3Q9UN70 934 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 MSRB2Q9Y3D2 182 aa8.04□□□□□ -1.12
CD44-211ENST00000442151 SDK1Q7Z5N4 2213 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 FAM221BA6H8Z2 402 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 KCNU1A8MYU2 1149 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 GIPC1O14908 333 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 MSI1O43347 362 aaKnown RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 TRUB2O95900 331 aaKnown RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 CD59P13987 128 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 TACR2P21452 398 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 C5AR1P21730 350 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 ERCC5P28715 1186 aaPredicted RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 NOS2P35228 1153 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 GRIA4P48058 902 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 CCR5P51681 352 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 KRT83P78385 493 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 GRIK2Q13002 908 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 ZNF177Q13360 481 aaPredicted RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 ARHGAP44Q17R89 818 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 DCAF6Q58WW2 860 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 KIAA0895LQ68EN5 471 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 RFWD3Q6PCD5 774 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 LRRC31Q6UY01 552 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 GLRX5Q86SX6 157 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 PRPF39Q86UA1 669 aaKnown RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 NAXDQ8IW45 347 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 ARHGEF19Q8IW93 802 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 LGI2Q8N0V4 545 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 TMEM35BQ8NCS4 154 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 CYB5D2Q8WUJ1 264 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 FCRL2Q96LA5 508 aaPredicted RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 KREMEN1Q96MU8 473 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 RSPH9Q9H1X1 276 aaPredicted RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 PABPC3Q9H361 631 aaKnown RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 GAREM1Q9H706 876 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 FAM204AQ9H8W3 233 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 TM7SF3Q9NS93 570 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 EIF2B4Q9UI10 523 aaKnown RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 STAP1Q9ULZ2 295 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 ERVW-1Q9UQF0 538 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 NAALADL1Q9UQQ1 740 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 DAAM1Q9Y4D1 1078 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 A0A1B0GVM2 712 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 TCAF2A6NFQ2 919 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 C1QTNF3-AMACRE9PGA6 284 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 PIK3R2O00459 728 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 SLC7A4O43246 635 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 MOCS2O96007 188 aaPredicted RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 GOT1P17174 413 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 MAOBP27338 520 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 SCNN1AP37088 669 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 CSKP41240 450 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 PLK1P53350 603 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 RACK1P63244 317 aaKnown RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 FAM133BQ5BKY9 247 aaKnown RBP8.03□□□□□ -1.12
CD44-211ENST00000442151 PITRM1Q5JRX3 1037 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 BRMS1LQ5PSV4 323 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 TMEM215Q68D42 235 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 OR6B2Q6IFH4 312 aa8.03□□□□□ -1.12
CD44-211ENST00000442151 DENND1BQ6P3S1 775 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms