RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 AARS2Q5JTZ9 985 aaKnown RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 ARL14EPQ8N8R7 260 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 ARL8AQ96BM9 186 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 ELMO2Q96JJ3 720 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 LPIN3Q9BQK8 851 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 DZANK1Q9NVP4 752 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 L3MBTL1Q9Y468 752 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 PER2O15055 1255 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 PTK6Q13882 451 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 LRRC38Q5VT99 294 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 PMF1Q6P1K2 205 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 FAM180AQ6UWF9 173 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 TBC1D1Q86TI0 1168 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 PLD4Q96BZ4 506 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 ERLEC1Q96DZ1 483 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 KCNK16Q96T55 309 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 ADAM21Q9UKJ8 722 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 RRP15Q9Y3B9 282 aaKnown RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 DOCK2Q92608 1830 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 B3GNT9Q6UX72 402 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 NT5DC3Q86UY8 548 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 ACTL9Q8TC94 416 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 PHOSPHO2Q8TCD6 241 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 ACTRT1Q8TDG2 376 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 TEKT4Q8WW24 435 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 STAMBPL1Q96FJ0 436 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 TMEM121Q9BTD3 319 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 CHMP2BQ9UQN3 213 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 KPNA3O00505 521 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 RAD51CO43502 376 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 PAGE1O75459 146 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 SNRPD1P62314 119 aaKnown RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 DNAJB7Q7Z6W7 309 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 PCDHB18PQ96TA0 734 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 LRRC40Q9H9A6 602 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 HBS1LQ9Y450 684 aaKnown RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 PTPRJQ12913 1337 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 LRPAP1P30533 357 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 DDIASQ8IXT1 998 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 NAT16Q8N8M0 369 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 STK32AQ8WU08 396 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 NDRG1Q92597 394 aaKnown RBP13.22□□□□□ -0.29
PTCH1-207ENST00000429896 SKA1Q96BD8 255 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 ULK4Q96C45 1275 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 RHOBTB2Q9BYZ6 727 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 CPQQ9Y646 472 aa13.22□□□□□ -0.29
PTCH1-207ENST00000429896 KDM1AO60341 852 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 NDUFS2O75306 463 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 HIST1H2AGP0C0S8 130 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-207ENST00000429896 HIST1H2ADP20671 130 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 BMPR1AP36894 532 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 PTK2BQ14289 1009 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 PLEKHG4Q58EX7 1191 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 MARCH8Q5T0T0 291 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 CACUL1Q86Y37 369 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 LRRC15Q8TF66 581 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 USP6NLQ92738 828 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 HIST1H2AHQ96KK5 128 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 FCRL2Q96LA5 508 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-207ENST00000429896 HIST1H2AJQ99878 128 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 OMDQ99983 421 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 H2AFJQ9BTM1 129 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 DRC3Q9H069 523 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 PDLIM7Q9NR12 457 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 PIRO00625 290 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 SPAG6O75602 509 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 PRLRP16471 622 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 DDX6P26196 483 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTCH1-207ENST00000429896 TYK2P29597 1187 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 SERPINA4P29622 427 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 ATXN3P54252 364 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-207ENST00000429896 JAM2P57087 298 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 WDR5P61964 334 aaKnown RBP13.21□□□□□ -0.29
PTCH1-207ENST00000429896 KIAA1324Q6UXG2 1013 aaKnown RBP13.21□□□□□ -0.29
PTCH1-207ENST00000429896 CNPY4Q8N129 248 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 MYH8P13535 1937 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 GOLGA8QA0A0J9YX86 632 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 GOLGA8OA6NCC3 632 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 GOLGA8NF8WBI6 632 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 ITGALP20701 1170 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 POLR2LP62875 67 aaKnown RBP13.21□□□□□ -0.29
PTCH1-207ENST00000429896 LRRC14Q15048 493 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 NUDCD3Q8IVD9 361 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 HS6ST3Q8IZP7 471 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 TMCO5AQ8N6Q1 288 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 TFAP2BQ92481 460 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 ZNF669Q96BR6 464 aaPredicted RBP13.21□□□□□ -0.29
PTCH1-207ENST00000429896 ISCUQ9H1K1 167 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 DEC1Q9P2X7 70 aa13.21□□□□□ -0.29
PTCH1-207ENST00000429896 C1QTNF3-AMACRE9PGA6 284 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 DIAPH2O60879 1101 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 RB1P06400 928 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 GPR17Q13304 367 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 FBXL19Q6PCT2 694 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 STRADAQ7RTN6 431 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 MRPL10Q7Z7H8 261 aaKnown RBP13.21□□□□□ -0.3
PTCH1-207ENST00000429896 CRLF3Q8IUI8 442 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 VAT1Q99536 393 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 ZBTB18Q99592 522 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms