RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GPR20Q99678 358 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 PGAP2Q9UHJ9 254 aa8.87□□□□□ -0.99
USP40-203ENST00000427112 A0A096LPK6 155 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 FAM149AA5PLN7 773 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 MAGEA13PA6NCF6 341 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 ZBTB42B2RXF5 422 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 C9IYK1 514 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 TM7SF2O76062 418 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 CLIC3O95833 236 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 CTSHP09668 335 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 CPA3P15088 417 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 CDH15P55291 814 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 GJA9P57773 515 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 MBTD1Q05BQ5 628 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 IER5Q5VY09 327 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 DCAF15Q66K64 600 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 IRGCQ6NXR0 463 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 FBXL19Q6PCT2 694 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 CPNE9Q8IYJ1 553 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 ENDOVQ8N8Q3 282 aaKnown RBP8.86□□□□□ -0.99
USP40-203ENST00000427112 SPON1Q9HCB6 807 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 SNX15Q9NRS6 342 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 CHCHD3Q9NX63 227 aaKnown RBP8.86□□□□□ -0.99
USP40-203ENST00000427112 GJD2Q9UKL4 321 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 POMPQ9Y244 141 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 SSX2IPQ9Y2D8 614 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 UBR3Q6ZT12 1888 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 PMM2O15305 246 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 MAGEB3O15480 346 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 SUPT3HO75486 399 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 NPM3O75607 178 aaKnown RBP8.86□□□□□ -0.99
USP40-203ENST00000427112 PIRTP0C851 137 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 FGF3P11487 239 aaPredicted RBP8.86□□□□□ -0.99
USP40-203ENST00000427112 TGM2P21980 687 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 RAB27AP51159 221 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 SLC12A1Q13621 1099 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 CCNIQ14094 377 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 PCLAFQ15004 111 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 LRRC38Q5VT99 294 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 SLC9A4Q6AI14 798 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 MTHFD1LQ6UB35 978 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 SLC41A1Q8IVJ1 513 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 ALKBH8Q96BT7 664 aaKnown RBP8.86□□□□□ -0.99
USP40-203ENST00000427112 PRM3Q9NNZ6 103 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 CDH22Q9UJ99 828 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 FOCADQ5VW36 1801 aa8.86□□□□□ -0.99
USP40-203ENST00000427112 PIGNO95427 931 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CHRNA4P43681 627 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 EFNA5P52803 228 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CLDN10P78369 228 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 MPP1Q00013 466 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 SURF1Q15526 300 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CNGA3Q16281 694 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 METTL7BQ6UX53 244 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 ARHGAP36Q6ZRI8 547 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 GK5Q6ZS86 529 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 TDRD5Q8NAT2 981 aaKnown RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 AGBL3Q8NEM8 1001 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 DCUN1D5Q9BTE7 237 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CCDC106Q9BWC9 280 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 PDZD7Q9H5P4 517 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 BARX2Q9UMQ3 279 aaPredicted RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 PIN4Q9Y237 131 aaKnown RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 PTGDR2Q9Y5Y4 395 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 KIF13BQ9NQT8 1826 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 COL11A2P13942 1736 aaPredicted RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 AURKAO14965 403 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 P4HA1P13674 534 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 TKTP29401 623 aaKnown RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 L1CAMP32004 1257 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 THOP1P52888 689 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 FOLH1Q04609 750 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 SLC18A2Q05940 514 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 USP10Q14694 798 aaKnown RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 SCIMPQ6UWF3 145 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 RBM44Q6ZP01 1051 aaKnown RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 DHDDSQ86SQ9 333 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 NT5DC4Q86YG4 428 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 BHLHE22Q8NFJ8 381 aaPredicted RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 OR9I1Q8NGQ6 314 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 FOXP3Q9BZS1 431 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 S100A14Q9HCY8 104 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 THAP1Q9NVV9 213 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 KCNK4Q9NYG8 393 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CCDC167Q9P0B6 97 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CNTN3Q9P232 1028 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 WDR35Q9P2L0 1181 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 CSADQ9Y600 493 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 STYXL1Q9Y6J8 313 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 C5orf42Q9H799 3197 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 NRXN2Q9P2S2 1712 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 PLIN3O60664 434 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 LMNAP02545 664 aaKnown RBP8.85□□□□□ -0.99
USP40-203ENST00000427112 USP17L7P0C7H9 530 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 VDRP11473 427 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 ITGAXP20702 1163 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 EPHX2P34913 555 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 ACTR3P61158 418 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 TSPY1Q01534 308 aa8.85□□□□□ -0.99
USP40-203ENST00000427112 SLC6A3Q01959 620 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms