RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SGK1O00141 431 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 ADAM23O75077 832 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CLDN11O75508 207 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 LRIG2O94898 1065 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 TDGF1P13385 188 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 HNRNPLP14866 589 aaKnown RBP eCLIP12.85□□□□□ -0.35
SKA1-203ENST00000417656 TCF4P15884 667 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CYLC1P35663 651 aaPredicted RBP12.85□□□□□ -0.35
SKA1-203ENST00000417656 CSKP41240 450 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CXCL12P48061 93 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CDH4P55283 916 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 NRG1Q02297 640 aaPredicted RBP12.85□□□□□ -0.35
SKA1-203ENST00000417656 CSTF1Q05048 431 aaKnown RBP12.85□□□□□ -0.35
SKA1-203ENST00000417656 PITRM1Q5JRX3 1037 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 ACBD5Q5T8D3 534 aaPredicted RBP12.85□□□□□ -0.35
SKA1-203ENST00000417656 MBLAC2Q68D91 279 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 RAD9BQ6WBX8 426 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CYP4V2Q6ZWL3 525 aaPredicted RBP12.85□□□□□ -0.35
SKA1-203ENST00000417656 SYT13Q7L8C5 426 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 KIAA0907Q7Z7F0 614 aaPredicted RBP12.85□□□□□ -0.35
SKA1-203ENST00000417656 ADIPOR2Q86V24 386 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CPNE8Q86YQ8 564 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 TMTC1Q8IUR5 882 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 TMEM139Q8IV31 216 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CCDC170Q8IYT3 715 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 NIPA2Q8N8Q9 360 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 OR52K2Q8NGK3 314 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CYB5D2Q8WUJ1 264 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 UCMAQ8WVF2 138 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 TBC1D31Q96DN5 1066 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 BAG1Q99933 345 aaPredicted RBP12.85□□□□□ -0.35
SKA1-203ENST00000417656 ZYG11BQ9C0D3 744 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 OSBPL2Q9H1P3 480 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 OSGEPQ9NPF4 335 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 ELOVL2Q9NXB9 296 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 CACNA2D2Q9NY47 1150 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 UVRAGQ9P2Y5 699 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 OR12D3Q9UGF7 316 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 IP6K2Q9UHH9 426 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 INTS6Q9UL03 887 aaKnown RBP12.85□□□□□ -0.35
SKA1-203ENST00000417656 AP4E1Q9UPM8 1137 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 SLC8A2Q9UPR5 921 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 STARD13Q9Y3M8 1113 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 DRGXA6NNA5 263 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 TMEM110-MUSTN1A8MSY1 372 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 K7ESF4 209 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 MYO1FO00160 1098 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 PRPSAP2O60256 369 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 NDUFA10O95299 355 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 PAPSS2O95340 614 aaPredicted RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 LCA5LO95447 670 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 RHOCP08134 193 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 SP9P0CG40 484 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 HOXB2P14652 356 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 MZF1P28698 734 aaPredicted RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 PTPN5P54829 565 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 AIF1P55008 147 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 DMWDQ09019 674 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 ZNF177Q13360 481 aaPredicted RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 PIGHQ14442 188 aaPredicted RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 ZNF234Q14588 700 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 SPA17Q15506 151 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 CA9Q16790 459 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 SMTNL2Q2TAL5 461 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 PLEKHG6Q3KR16 790 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 HSF5Q4G112 596 aaPredicted RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 EOGTQ5NDL2 527 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 RWDD4Q6NW29 188 aaKnown RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 TRMT11Q7Z4G4 463 aaKnown RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 CHPFQ8IZ52 775 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 APCDD1Q8J025 514 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 KCNV2Q8TDN2 545 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 RFFLQ8WZ73 363 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 ERLEC1Q96DZ1 483 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 KCNH6Q9H252 994 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 KIAA1522Q9P206 1035 aaPredicted RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 PPARGC1AQ9UBK2 798 aaKnown RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 ZNF212Q9UDV6 495 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 FBXO4Q9UKT5 387 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 TFR2Q9UP52 801 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 RAD54BQ9Y620 910 aa12.84□□□□□ -0.35
SKA1-203ENST00000417656 MYO18AQ92614 2054 aaKnown RBP12.84□□□□□ -0.35
SKA1-203ENST00000417656 CKAP5Q14008 2032 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 EIF3CLB5ME19 914 aaKnown RBP12.83□□□□□ -0.36
SKA1-203ENST00000417656 CREB3O43889 395 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 PROSCO94903 275 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 POLR2EP19388 210 aaKnown RBP12.83□□□□□ -0.36
SKA1-203ENST00000417656 PRKCHP24723 683 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 IL1R2P27930 398 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 NTSR1P30989 418 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 L1CAMP32004 1257 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 PCK1P35558 622 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 GJC1P36383 396 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 IL12RB1P42701 662 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 CTSOP43234 321 aaPredicted RBP12.83□□□□□ -0.36
SKA1-203ENST00000417656 MAGEA1P43355 309 aa12.83□□□□□ -0.36
SKA1-203ENST00000417656 PXNP49023 591 aaPredicted RBP12.83□□□□□ -0.36
SKA1-203ENST00000417656 SLC25A11Q02978 314 aaKnown RBP12.83□□□□□ -0.36
SKA1-203ENST00000417656 SEMA3BQ13214 749 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms