RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ZC3H3Q8IXZ2 948 aaKnown RBP11.44□□□□□ -0.58
PTPRF-204ENST00000412568 SPATA6LQ8N4H0 392 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 ZNF75CPQ92670 426 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-204ENST00000412568 CENPTQ96BT3 561 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 TMEM237Q96Q45 408 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 TM6SF2Q9BZW4 377 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 CD274Q9NZQ7 290 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 THEGQ9P2T0 379 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 TRIM33Q9UPN9 1127 aa11.44□□□□□ -0.58
PTPRF-204ENST00000412568 E9PBE3 544 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 KLHL41O60662 606 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 ATG7O95352 703 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 CCND1P24385 295 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 SERPINB4P48594 390 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 CDH17Q12864 832 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 LBRQ14739 615 aaKnown RBP11.43□□□□□ -0.58
PTPRF-204ENST00000412568 TIGD5Q53EQ6 642 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 TAPT1Q6NXT6 567 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 FAM228AQ86W67 206 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 GLIS1Q8NBF1 620 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 NAT9Q9BTE0 207 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 BAG5Q9UL15 447 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 CDY1Q9Y6F8 540 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 LAMA4Q16363 1823 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 URB1O60287 2271 aaKnown RBP11.43□□□□□ -0.58
PTPRF-204ENST00000412568 GNGT2O14610 69 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 RENBPP51606 427 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 EPHB3P54753 998 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 KLC1Q07866 573 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 IKBKEQ14164 716 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 HIC1Q14526 733 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 CALML6Q8TD86 181 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 HAPLN2Q9GZV7 340 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 HIPK3Q9H422 1215 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 GPAMQ9HCL2 828 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 ACSS2Q9NR19 701 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 NDE1Q9NXR1 346 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 CRLS1Q9UJA2 301 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 PKP3Q9Y446 797 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 L3MBTL1Q9Y468 752 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 MARF1Q9Y4F3 1742 aaKnown RBP11.43□□□□□ -0.58
PTPRF-204ENST00000412568 KAT6AQ92794 2004 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 A0A096LPK6 155 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 AP3B1O00203 1094 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 FKTNO75072 461 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 RPLP2P05387 115 aaKnown RBP11.43□□□□□ -0.58
PTPRF-204ENST00000412568 ST8SIA6P61647 398 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 SLC25A52Q3SY17 297 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 SPDYAQ5MJ70 313 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 C6orf10Q5SRN2 563 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 TIGD7Q6NT04 549 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-204ENST00000412568 DENND1CQ8IV53 801 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 FUKQ8N0W3 1084 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 TOP6BLQ8N6T0 577 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 MTBPQ96DY7 904 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 ZMAT2Q96NC0 199 aaKnown RBP11.43□□□□□ -0.58
PTPRF-204ENST00000412568 C16orf70Q9BSU1 422 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 ACOT9Q9Y305 439 aa11.43□□□□□ -0.58
PTPRF-204ENST00000412568 NCAM2O15394 837 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 MFSD11O43934 449 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SHOX2O60902 331 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 CABYRO75952 493 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SRP72O76094 671 aaKnown RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 CBX6O95503 412 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 PIGRP01833 764 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SERPINF2P08697 491 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 RALBP11234 206 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 CPA3P15088 417 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 EEF1B2P24534 225 aaKnown RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 CCND3P30281 292 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 TAF10Q12962 218 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 ARHGEF7Q14155 803 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SYPL2Q5VXT5 272 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 UNC5AQ6ZN44 842 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SLC24A5Q71RS6 500 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 OTOP2Q7RTS6 562 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 DCUN1D1Q96GG9 259 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 TMEM59LQ9UK28 342 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 PCDHGC3Q9UN70 934 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 TCRBV9S1A1TA0A576 114 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 C2CD4BA6NLJ0 364 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 GSTA4O15217 222 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 TLR5O60602 858 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 GLRA3O75311 464 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 TRIM16O95361 564 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 RPL9P32969 192 aaKnown RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 HADHBP55084 474 aaKnown RBP11.42□□□□□ -0.58
PTPRF-204ENST00000412568 AP2B1P63010 937 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 MAP3K10Q02779 954 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 GRIK3Q13003 919 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 GRB14Q14449 540 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 FAM83EQ2M2I3 478 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 DCLRE1AQ6PJP8 1040 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 ZDHHC24Q6UX98 284 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 SPATA17Q96L03 361 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 ZNF670Q9BS34 389 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 TMEM120AQ9BXJ8 343 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 CNGB3Q9NQW8 809 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 DYRK4Q9NR20 520 aa11.42□□□□□ -0.58
PTPRF-204ENST00000412568 A0A1W2PQH9 124 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms