RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ARHGAP39Q9C0H5 1083 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 WDR55Q9H6Y2 383 aaPredicted RBP13.72□□□□□ -0.21
VPS54-203ENST00000409558 BFARQ9NZS9 450 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 MTO1Q9Y2Z2 717 aaKnown RBP13.72□□□□□ -0.21
VPS54-203ENST00000409558 PCDHA11Q9Y5I1 949 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 XPOTO43592 962 aaKnown RBP13.72□□□□□ -0.21
VPS54-203ENST00000409558 DCXO43602 365 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 CCNB1P14635 433 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 SERPINB5P36952 375 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 GRIK1P39086 918 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 PGFP49763 221 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 ZBTB17Q13105 803 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 LDLRAD1Q5T700 205 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 MIB1Q86YT6 1006 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 RYBPQ8N488 228 aaPredicted RBP13.72□□□□□ -0.21
VPS54-203ENST00000409558 YIPF3Q9GZM5 350 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 VRTNQ9H8Y1 702 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 RNPEPL1Q9HAU8 725 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 PIRO00625 290 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 ADRA1BP35368 520 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 SLC1A6P48664 564 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 UBXN11Q5T124 520 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 LRRC52Q8N7C0 313 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 PYDC1Q8WXC3 89 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 AGO3Q9H9G7 860 aaKnown RBP13.72□□□□□ -0.21
VPS54-203ENST00000409558 PPME1Q9Y570 386 aa13.72□□□□□ -0.21
VPS54-203ENST00000409558 NDC80O14777 642 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 POLBP06746 335 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 ARSAP15289 507 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 WASHC5Q12768 1159 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 TIGD5Q53EQ6 642 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 FAM35AQ86V20 835 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 QKIQ96PU8 341 aaKnown RBP eCLIP13.71□□□□□ -0.216e-11■■■■□ 26.7
VPS54-203ENST00000409558 DHRS4Q9BTZ2 278 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 TASP1Q9H6P5 420 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 PLA2G4CQ9UP65 541 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 GLTPD2A6NH11 291 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 PDK1Q15118 436 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 EMID1Q96A84 441 aaPredicted RBP13.71□□□□□ -0.21
VPS54-203ENST00000409558 SPDL1Q96EA4 605 aa13.71□□□□□ -0.21
VPS54-203ENST00000409558 FRMD8P1Q9BZ68 369 aaPredicted RBP13.71□□□□□ -0.21
VPS54-203ENST00000409558 TK2O00142 265 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 PPP1R12AO14974 1030 aaPredicted RBP13.71□□□□□ -0.22
VPS54-203ENST00000409558 LRIG2O94898 1065 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 VAPBO95292 243 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 SETSIPP0DME0 302 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 NMBRP28336 390 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 NOS2P35228 1153 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 ZBTB6Q15916 424 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 UNC93AQ86WB7 457 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 WDR75Q8IWA0 830 aaKnown RBP13.71□□□□□ -0.22
VPS54-203ENST00000409558 DENND6AQ8IWF6 608 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 GSTCDQ8NEC7 633 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 STK32AQ8WU08 396 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 MYLPFQ96A32 169 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 PABPC5Q96DU9 382 aaKnown RBP13.71□□□□□ -0.22
VPS54-203ENST00000409558 FAM105AQ9NUU6 356 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 PARP14Q460N5 1801 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 SPECC1L-ADORA2AF8WAN1 911 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 LTFP02788 710 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 BPGMP07738 259 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 PIRTP0C851 137 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 ZFXP17010 805 aaPredicted RBP13.71□□□□□ -0.22
VPS54-203ENST00000409558 PBX3P40426 434 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 FBXO48Q5FWF7 155 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 SHCBP1Q8NEM2 672 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 SLC26A7Q8TE54 656 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 FTHL17Q9BXU8 183 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 AK5Q9Y6K8 562 aa13.71□□□□□ -0.22
VPS54-203ENST00000409558 TXNDC9O14530 226 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 AIM2O14862 343 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 XPO1O14980 1071 aaKnown RBP13.7□□□□□ -0.22
VPS54-203ENST00000409558 UBTFL6P0CB48 400 aaPredicted RBP13.7□□□□□ -0.22
VPS54-203ENST00000409558 CALB2P22676 271 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 CUL3Q13618 768 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 GRB14Q14449 540 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 PDCD2Q16342 344 aaPredicted RBP13.7□□□□□ -0.22
VPS54-203ENST00000409558 MCUQ8NE86 351 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 TEKT4Q8WW24 435 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 CERS2Q96G23 380 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 NDNQ99608 321 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 SNX15Q9NRS6 342 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 NDFIP2Q9NV92 336 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 CNTN3Q9P232 1028 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 APOBEC2Q9Y235 224 aaKnown RBP13.7□□□□□ -0.22
VPS54-203ENST00000409558 A0A096LPK6 155 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 F2P00734 622 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 CHRNGP07510 517 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 TPBGLP0DKB5 382 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 PTPN3P26045 913 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 SERPINB6P35237 376 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 SLC18A2Q05940 514 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 USP10Q14694 798 aaKnown RBP13.7□□□□□ -0.22
VPS54-203ENST00000409558 KYAT1Q16773 422 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 KLHL5Q96PQ7 755 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 TMLHEQ9NVH6 421 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 ARL5CA6NH57 179 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 GCATO75600 419 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 PROCP04070 461 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 PTPN9P43378 593 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms