RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 KCNMA1Q12791 1236 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 NUGGCQ68CJ6 796 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 GOLGA1Q92805 767 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 TTC17Q96AE7 1141 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 MYO19Q96H55 970 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 ORAI3Q9BRQ5 295 aa29.54■■■□□ 2.32
HMGB1-205ENST00000399494 WDR3Q9UNX4 943 aaKnown RBP eCLIP29.54■■■□□ 2.32
HMGB1-205ENST00000399494 KNL1Q8NG31 2342 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 M0QYV0 167 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 FSBPO95073 299 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 LTFP02788 710 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 ZNF18P17022 549 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 TBX4P57082 545 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 RAPGEF1Q13905 1077 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 ZSCAN23Q3MJ62 389 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 KCNT1Q5JUK3 1230 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 NADSYN1Q6IA69 706 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 DHX40Q8IX18 779 aaKnown RBP29.53■■■□□ 2.32
HMGB1-205ENST00000399494 FIBINQ8TAL6 211 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 MDM1Q8TC05 714 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 CLEC4CQ8WTT0 213 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 SHC3Q92529 594 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 RSPH9Q9H1X1 276 aaPredicted RBP29.53■■■□□ 2.32
HMGB1-205ENST00000399494 BAHCC1Q9P281 2608 aa29.53■■■□□ 2.32
HMGB1-205ENST00000399494 MED7O43513 233 aa29.52■■■□□ 2.32
HMGB1-205ENST00000399494 GNA15P30679 374 aa29.52■■■□□ 2.32
HMGB1-205ENST00000399494 ZNF776Q68DI1 518 aaPredicted RBP29.52■■■□□ 2.32
HMGB1-205ENST00000399494 C19orf48Q6RUI8 117 aa29.52■■■□□ 2.32
HMGB1-205ENST00000399494 ZNF557Q8N988 423 aaPredicted RBP29.52■■■□□ 2.32
HMGB1-205ENST00000399494 IGSF8Q969P0 613 aa29.52■■■□□ 2.32
HMGB1-205ENST00000399494 STIM2Q9P246 746 aa29.52■■■□□ 2.32
HMGB1-205ENST00000399494 AJAP1Q9UKB5 411 aaPredicted RBP29.52■■■□□ 2.32
HMGB1-205ENST00000399494 INTS6Q9UL03 887 aaKnown RBP29.52■■■□□ 2.32
HMGB1-205ENST00000399494 ADAMTS20P59510 1910 aa29.51■■■□□ 2.32
HMGB1-205ENST00000399494 THAP12O43422 761 aa29.51■■■□□ 2.31
HMGB1-205ENST00000399494 TTC31Q49AM3 519 aaPredicted RBP29.51■■■□□ 2.31
HMGB1-205ENST00000399494 KLHDC7AQ5VTJ3 777 aa29.51■■■□□ 2.31
HMGB1-205ENST00000399494 LAYNQ6UX15 382 aa29.51■■■□□ 2.31
HMGB1-205ENST00000399494 MFN1Q8IWA4 741 aa29.51■■■□□ 2.31
HMGB1-205ENST00000399494 MYEOVQ96EZ4 313 aa29.51■■■□□ 2.31
HMGB1-205ENST00000399494 HSFY1Q96LI6 401 aa29.51■■■□□ 2.31
HMGB1-205ENST00000399494 PCMTD1Q96MG8 357 aaPredicted RBP29.51■■■□□ 2.31
HMGB1-205ENST00000399494 HSD3B7Q9H2F3 369 aa29.51■■■□□ 2.31
HMGB1-205ENST00000399494 H0Y8X5 98 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 FYNP06241 537 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 IGHV4-34P06331 123 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 CTSKP43235 329 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 USP30Q70CQ3 517 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 MRGPRX3Q96LB0 322 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 PABPC3Q9H361 631 aaKnown RBP29.5■■■□□ 2.31
HMGB1-205ENST00000399494 SCML1Q9UN30 329 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 NCKAP1Q9Y2A7 1128 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 FHOD1Q9Y613 1164 aa29.5■■■□□ 2.31
HMGB1-205ENST00000399494 GOLGA8CPA6NN73 597 aa29.49■■■□□ 2.31
HMGB1-205ENST00000399494 LGALS16A8MUM7 142 aa29.49■■■□□ 2.31
HMGB1-205ENST00000399494 PCDHGA12O60330 932 aa29.49■■■□□ 2.31
HMGB1-205ENST00000399494 ATP1A3P13637 1013 aa29.49■■■□□ 2.31
HMGB1-205ENST00000399494 TPM4P67936 248 aa29.49■■■□□ 2.31
HMGB1-205ENST00000399494 UBXN1Q04323 297 aa29.49■■■□□ 2.31
HMGB1-205ENST00000399494 HNRNPA1L2Q32P51 320 aaKnown RBP29.49■■■□□ 2.31
HMGB1-205ENST00000399494 KIAA0895LQ68EN5 471 aa29.49■■■□□ 2.31
HMGB1-205ENST00000399494 HJURPQ8NCD3 748 aaPredicted RBP29.49■■■□□ 2.31
HMGB1-205ENST00000399494 FCRL2Q96LA5 508 aaPredicted RBP29.49■■■□□ 2.31
HMGB1-205ENST00000399494 PRICKLE1Q96MT3 831 aaPredicted RBP29.49■■■□□ 2.31
HMGB1-205ENST00000399494 CABIN1Q9Y6J0 2220 aa29.49■■■□□ 2.31
HMGB1-205ENST00000399494 TMEM131Q92545 1883 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 TNFSF14O43557 240 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 SIN3BO75182 1162 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 FBXO21O94952 628 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 ASLP04424 464 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 UCHL3P15374 230 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 CSKP41240 450 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 GRK6P43250 576 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 ST8SIA6P61647 398 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 RPS24P62847 133 aaKnown RBP29.48■■■□□ 2.31
HMGB1-205ENST00000399494 PTK2Q05397 1052 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 ARID5BQ14865 1188 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 SMYD5Q6GMV2 418 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 MARCH9Q86YJ5 346 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 ZNF606Q8WXB4 792 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 DDX50Q9BQ39 737 aaKnown RBP29.48■■■□□ 2.31
HMGB1-205ENST00000399494 MIS12Q9H081 205 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 PLCB1Q9NQ66 1216 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 FBXL12Q9NXK8 326 aa29.48■■■□□ 2.31
HMGB1-205ENST00000399494 FOXN3O00409 490 aaPredicted RBP29.47■■■□□ 2.31
HMGB1-205ENST00000399494 CCT8P50990 548 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 GALCP54803 685 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 RACK1P63244 317 aaKnown RBP29.47■■■□□ 2.31
HMGB1-205ENST00000399494 DRAP1Q14919 205 aaPredicted RBP29.47■■■□□ 2.31
HMGB1-205ENST00000399494 NFKBIBQ15653 356 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 FSCBQ5H9T9 825 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 DPY19L2P1Q6NXN4 242 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 SCUBE3Q8IX30 993 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 CARNMT1Q8N4J0 409 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 KDM1BQ8NB78 822 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 DQX1Q8TE96 717 aaKnown RBP29.47■■■□□ 2.31
HMGB1-205ENST00000399494 GANCQ8TET4 914 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 SLC39A13Q96H72 371 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 ACP6Q9NPH0 428 aa29.47■■■□□ 2.31
HMGB1-205ENST00000399494 FAM207AQ9NSI2 230 aaPredicted RBP29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms