RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 C8orf74Q6P047 294 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 CCDC137Q6PK04 289 aaKnown RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 FAM72BQ86X60 149 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 ZNF354CQ86Y25 554 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 CDKL3Q8IVW4 592 aaPredicted RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 NPAS3Q8IXF0 933 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 HJURPQ8NCD3 748 aaPredicted RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 ACTL9Q8TC94 416 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 C1orf54Q8WWF1 131 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 OTUB2Q96DC9 234 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 TMA16Q96EY4 203 aaKnown RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 ZFRQ96KR1 1074 aaKnown RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 KRT12Q99456 494 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 MAGEB5Q9BZ81 275 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 RBM12Q9NTZ6 932 aaKnown RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 ZNF148Q9UQR1 794 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 PCDHGA4Q9Y5G9 962 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 GOLGA6L7A0A1B0GV03 622 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 I6L893 689 aaPredicted RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 TSPAN3O60637 253 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 CLDN11O75508 207 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 STK10O94804 968 aaKnown RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 KLKB1P03952 638 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 TCF3P15923 654 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 HOXC13P31276 330 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 MAPKAPK2P49137 400 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 CDH4P55283 916 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 ZNF177Q13360 481 aaPredicted RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 SNX1Q13596 522 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 BYSLQ13895 437 aaKnown RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 MPPE1Q53F39 396 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 MANEALQ5VSG8 457 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 NCBP2-AS2Q69YL0 99 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 DARS2Q6PI48 645 aaKnown RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 C14orf80Q86SX3 495 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 PQLC3Q8N755 202 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 PLD5Q8N7P1 536 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 RTL3Q8N8U3 475 aaKnown RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 ZNF557Q8N988 423 aaPredicted RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 TDRD5Q8NAT2 981 aaKnown RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 DDI1Q8WTU0 396 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 RSAD2Q8WXG1 361 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 DDX47Q9H0S4 455 aaKnown RBP14.61□□□□□ -0.07
SKA1-202ENST00000398452 S1PR5Q9H228 398 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 LRRC19Q9H756 370 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 ZFP14Q9HCL3 533 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 STOML2Q9UJZ1 356 aa14.61□□□□□ -0.07
SKA1-202ENST00000398452 A0A1B0GVM2 712 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 TCRBV7S2A1N4TA0A589 114 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 CFAP69A5D8W1 941 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 TCAF2A6NFQ2 919 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 DRGXA6NNA5 263 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 H0Y626 953 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 DCLK1O15075 740 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 NEBLO76041 1014 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 ECEL1O95672 775 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 RBP3P10745 1247 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 OR1E1P30953 314 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 ETFBP38117 255 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 COILP38432 576 aaPredicted RBP14.6□□□□□ -0.07
SKA1-202ENST00000398452 USP4Q13107 963 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 XRCC4Q13426 336 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 DHX34Q14147 1143 aaKnown RBP14.6□□□□□ -0.07
SKA1-202ENST00000398452 PAFAH1B3Q15102 231 aaKnown RBP14.6□□□□□ -0.07
SKA1-202ENST00000398452 PPP1R7Q15435 360 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 GLE1Q53GS7 698 aaKnown RBP14.6□□□□□ -0.07
SKA1-202ENST00000398452 FAM133BQ5BKY9 247 aaKnown RBP14.6□□□□□ -0.07
SKA1-202ENST00000398452 TMEM31Q5JXX7 168 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 C6orf118Q5T5N4 469 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 NADSYN1Q6IA69 706 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 RFWD3Q6PCD5 774 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 Q6ZNB5 142 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 CHST9Q7L1S5 443 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 OTOP3Q7RTS5 596 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 ANKS1BQ7Z6G8 1248 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 TFAP2DQ7Z6R9 452 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 BBS7Q8IWZ6 715 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 CPXM2Q8N436 756 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 MMGT1Q8N4V1 131 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 KIAA1958Q8N8K9 716 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 PRELID2Q8N945 189 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 C12orf50Q8NA57 414 aaPredicted RBP14.6□□□□□ -0.07
SKA1-202ENST00000398452 CCNYQ8ND76 341 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 ATL2Q8NHH9 583 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 BPIFB1Q8TDL5 484 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 NSMCE1Q8WV22 266 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 ZSWIM3Q96MP5 696 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 ASB16Q96NS5 453 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 PRMT1Q99873 361 aaKnown RBP14.6□□□□□ -0.07
SKA1-202ENST00000398452 LRFN3Q9BTN0 628 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 BRD8Q9H0E9 1235 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 TMEM248Q9NWD8 314 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 OBP2AQ9NY56 170 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 MPP6Q9NZW5 540 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 CCL26Q9Y258 94 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 ATG2AQ2TAZ0 1938 aa14.6□□□□□ -0.07
SKA1-202ENST00000398452 ANAPC1Q9H1A4 1944 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 IGLV3-10A0A075B6K4 115 aa14.59□□□□□ -0.07
SKA1-202ENST00000398452 ARHGAP42A6NI28 874 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms