RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 UBP1Q9NZI7 540 aa13.05□□□□□ -0.32
CCDC88C-204ENST00000389857 CEP152O94986 1710 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 ACSL4O60488 711 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 KCNH1O95259 989 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 FAM228BP0C875 321 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 BIKQ13323 160 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 OVOS1Q6IE37 1185 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 TMPRSS6Q8IU80 811 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 ZFYVE1Q9HBF4 777 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 SHOC2Q9UQ13 582 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 GSTK1Q9Y2Q3 226 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 PPP2R3BQ9Y5P8 575 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 CYP1A1P04798 512 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 CLK3P49761 638 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 KLHL12Q53G59 568 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 USP45Q70EL2 814 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 PPP1R16AQ96I34 528 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 TMEM216Q9P0N5 145 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 ATP9AO75110 1047 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 AMHP03971 560 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 CCNA2P20248 432 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 GP5P40197 560 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 PSMD4P55036 377 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 GDPD5Q8WTR4 605 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 WDR27A2RRH5 827 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 MGRN1O60291 552 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 TMC7Q7Z402 723 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 SYT15Q9BQS2 421 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 RIBC2Q9H4K1 309 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 TBKBP1A7MCY6 615 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 AXLP30530 894 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 CASP4P49662 377 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 CLK2P49760 499 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 CDK7P50613 346 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 PTSQ03393 145 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 TCEA2Q15560 299 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 NEK5Q6P3R8 708 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF671Q8TAW3 534 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 UBASH3BQ8TF42 649 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 APOPT1Q96IL0 206 aa13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 SAE1Q9UBE0 346 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-204ENST00000389857 LTFP02788 710 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ANTXR2P58335 489 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 BCL2L1Q07817 233 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ADIGQ0VDE8 80 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 SPACA7Q96KW9 195 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 SNCAIPQ9Y6H5 919 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 MICAL2O94851 1124 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 TUBP50607 506 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 MYL6P60660 151 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 COPZ1P61923 177 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNHIT3Q15649 155 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 REXO1L1PQ8IX06 675 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ZCCHC7Q8N3Z6 543 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ITFG1Q8TB96 612 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 BTBD10Q9BSF8 475 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 TINF2Q9BSI4 451 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 PRDM16Q9HAZ2 1276 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ATP13A1Q9HD20 1204 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ADARB2Q9NS39 739 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 MYRFQ9Y2G1 1151 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 RRM1P23921 792 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 AKAP5P24588 427 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF135P52742 658 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 MYBPC2Q14324 1141 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 TIMM50Q3ZCQ8 353 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 FAM126BQ8IXS8 530 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 DPF3Q92784 378 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ZKSCAN4Q969J2 545 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 OMA1Q96E52 524 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 TBCBQ99426 244 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 MRPL9Q9BYD2 267 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 INVSQ9Y283 1065 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 SAMD7Q7Z3H4 446 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 C4orf19Q8IY42 314 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 OR6Y1Q8NGX8 325 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 MCCC1Q96RQ3 725 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 C1orf232A0A0U1RR37 186 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 SGTAO43765 313 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ZNF286BP0CG31 522 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ETS1P14921 441 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 POLR2EP19388 210 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 DNAJB2P25686 324 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 NEK3P51956 506 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 TOP3AQ13472 1001 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 FIGNQ5HY92 759 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 OR52L1Q8NGH7 329 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 HTR3CQ8WXA8 447 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 DCLK3Q9C098 648 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ZMYM5Q9UJ78 669 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 TFR2Q9UP52 801 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 ALOX12P18054 663 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 PPP4CP60510 307 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 R3HDM1Q15032 1099 aaKnown RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 FAM187BQ17R55 369 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 OTUD3Q5T2D3 398 aaPredicted RBP13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 MZT2BQ6NZ67 158 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 USP49Q70CQ1 688 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 CDH24Q86UP0 819 aa13.03□□□□□ -0.32
CCDC88C-204ENST00000389857 CAVIN3Q969G5 261 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms