RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NUP205Q92621 2012 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 CAPN9O14815 690 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 HAUS5O94927 633 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 POMCP01189 267 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 ITGA2BP08514 1039 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 FGF3P11487 239 aaPredicted RBP13.72□□□□□ -0.21
CCDC3-202ENST00000378839 CCND1P24385 295 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 RPL10AP62906 217 aaKnown RBP13.72□□□□□ -0.21
CCDC3-202ENST00000378839 N4BP2L1Q5TBK1 243 aaPredicted RBP13.72□□□□□ -0.21
CCDC3-202ENST00000378839 LGSNQ5TDP6 509 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 MBLAC2Q68D91 279 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.72□□□□□ -0.21
CCDC3-202ENST00000378839 KCNV2Q8TDN2 545 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 MYLPFQ96A32 169 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 NTAN1Q96AB6 310 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 RAB3IPQ96QF0 476 aaPredicted RBP13.72□□□□□ -0.21
CCDC3-202ENST00000378839 KATNAL1Q9BW62 490 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 UBP1Q9NZI7 540 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 TRPV2Q9Y5S1 764 aa13.72□□□□□ -0.21
CCDC3-202ENST00000378839 SCN10AQ9Y5Y9 1956 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 CAPN14A8MX76 684 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 LTFP02788 710 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 FASTKD1Q53R41 847 aaKnown RBP13.71□□□□□ -0.21
CCDC3-202ENST00000378839 CERCAMQ5T4B2 595 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 CMC1Q7Z7K0 106 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 HACE1Q8IYU2 909 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.71□□□□□ -0.21
CCDC3-202ENST00000378839 OR10T2Q8NGX3 314 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 SCAMP5Q8TAC9 235 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 NSMCE1Q8WV22 266 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 CELF6Q96J87 481 aaKnown RBP13.71□□□□□ -0.21
CCDC3-202ENST00000378839 ZNF570Q96NI8 536 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 PKMYT1Q99640 499 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 APBA2Q99767 749 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 CNGB3Q9NQW8 809 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 ZCWPW2A0A1B0GU75 182 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 DIAPH2O60879 1101 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 GNAZP19086 355 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 BDNFP23560 247 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 CPA2P48052 419 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 PPIDQ08752 370 aaKnown RBP13.71□□□□□ -0.21
CCDC3-202ENST00000378839 TAF2Q6P1X5 1199 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 MAVSQ7Z434 540 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 TAC4Q86UU9 113 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 PLD6Q8N2A8 252 aaKnown RBP13.71□□□□□ -0.21
CCDC3-202ENST00000378839 PGAP3Q96FM1 320 aaPredicted RBP13.71□□□□□ -0.21
CCDC3-202ENST00000378839 ATXN7L3BQ96GX2 97 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 TKTL2Q9H0I9 626 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 CSNK1G1Q9HCP0 422 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 TAS2R1Q9NYW7 299 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 C15orf41Q9Y2V0 281 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 HBS1LQ9Y450 684 aaKnown RBP13.71□□□□□ -0.21
CCDC3-202ENST00000378839 RPS6KL1Q9Y6S9 549 aa13.71□□□□□ -0.21
CCDC3-202ENST00000378839 PPP1R12AO14974 1030 aaPredicted RBP13.71□□□□□ -0.22
CCDC3-202ENST00000378839 GSC2O15499 205 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 LRIG2O94898 1065 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 TPH1P17752 444 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 CD52P31358 61 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 RGS2P41220 211 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 LHX1P48742 406 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 SERPINB9P50453 376 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 ZNF157P51786 506 aaPredicted RBP13.71□□□□□ -0.22
CCDC3-202ENST00000378839 AQP5P55064 265 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 TPI1P60174 286 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 IFRD2Q12894 506 aaPredicted RBP13.71□□□□□ -0.22
CCDC3-202ENST00000378839 PCLAFQ15004 111 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 BZW1Q7L1Q6 419 aaKnown RBP13.71□□□□□ -0.22
CCDC3-202ENST00000378839 SPNS2Q8IVW8 549 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 ATP2A3Q93084 1043 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 MFSD3Q96ES6 412 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 SLC9A7Q96T83 725 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 LBHD1Q9BQE6 289 aaPredicted RBP13.71□□□□□ -0.22
CCDC3-202ENST00000378839 TMEM216Q9P0N5 145 aa13.71□□□□□ -0.22
CCDC3-202ENST00000378839 KLHL8Q9P2G9 620 aaPredicted RBP13.71□□□□□ -0.22
CCDC3-202ENST00000378839 B4GALT3O60512 393 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 WFS1O76024 890 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 GNAT1P11488 350 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 CXCR3P49682 368 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 SARNPP82979 210 aaKnown RBP13.7□□□□□ -0.22
CCDC3-202ENST00000378839 TUBB3Q13509 450 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 TEDDM1Q5T9Z0 273 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 RASSF3Q86WH2 238 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 SHKBP1Q8TBC3 707 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 NSL1Q96IY1 281 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 ZIC5Q96T25 663 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 TACO1Q9BSH4 297 aaKnown RBP13.7□□□□□ -0.22
CCDC3-202ENST00000378839 OR12D3Q9UGF7 316 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 CDH9Q9ULB4 789 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 PLIN3O60664 434 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 FBXO21O94952 628 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 AP2A1O95782 977 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 FAM163BP0C2L3 166 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 DLG2Q15700 870 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 KHDC1Q4VXA5 237 aaKnown RBP13.7□□□□□ -0.22
CCDC3-202ENST00000378839 FAM171BQ6P995 826 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 OTOP3Q7RTS5 596 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 SERINC5Q86VE9 423 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 IFNL1Q8IU54 200 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 TMEM86AQ8N2M4 240 aa13.7□□□□□ -0.22
CCDC3-202ENST00000378839 CNTD1Q8N815 330 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms