RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MZF1P28698 734 aaPredicted RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 CTSOP43234 321 aaPredicted RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 SRSF5Q13243 272 aaKnown RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 EIF4HQ15056 248 aaKnown RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 PITRM1Q5JRX3 1037 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 ANO7Q6IWH7 933 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 KIAA1211LQ6NV74 962 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 LRRC31Q6UY01 552 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 TRMT11Q7Z4G4 463 aaKnown RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 TFAP2DQ7Z6R9 452 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 SLFN11Q7Z7L1 901 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 APCDD1Q8J025 514 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 ZNF557Q8N988 423 aaPredicted RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 ZBTB44Q8NCP5 570 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 NTAN1Q96AB6 310 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 CCDC42Q96M95 316 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 NUP85Q9BW27 656 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 MRPL47Q9HD33 250 aaKnown RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 GPATCH2LQ9NWQ4 482 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 KIAA1522Q9P206 1035 aaPredicted RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 OR12D3Q9UGF7 316 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 STON1Q9Y6Q2 735 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 ZFHX2Q9C0A1 2572 aaPredicted RBP13.77□□□□□ -0.21
VPS28-202ENST00000377348 IGLV3-10A0A075B6K4 115 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.76□□□□□ -0.21
VPS28-202ENST00000377348 A0A1W2PQF6 199 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 TCRBV21S2A2A0A5A6 115 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 CLDN11O75508 207 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 HLA-EP13747 358 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 PRKCHP24723 683 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 NBL1P41271 181 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 NRLP54845 237 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 CDH4P55283 916 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 ZNF177Q13360 481 aaPredicted RBP13.76□□□□□ -0.21
VPS28-202ENST00000377348 PTPRNQ16849 979 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 PLEKHG6Q3KR16 790 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 MANEALQ5VSG8 457 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 SDE2Q6IQ49 451 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 LONP2Q86WA8 852 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 CAMKK1Q8N5S9 505 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 ZNF366Q8N895 744 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 MDGA1Q8NFP4 955 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 FNIP1Q8TF40 1166 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 ATRIPQ8WXE1 791 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 PEBP4Q96S96 227 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 GABRG3Q99928 467 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 FAM126AQ9BYI3 521 aaPredicted RBP13.76□□□□□ -0.21
VPS28-202ENST00000377348 TPSD1Q9BZJ3 242 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 OSBPL2Q9H1P3 480 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 PCSK1NQ9UHG2 260 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 FZD10Q9ULW2 581 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 PCDHGA2Q9Y5H1 932 aa13.76□□□□□ -0.21
VPS28-202ENST00000377348 AXIN1O15169 862 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 HRO43593 1189 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 TIMM44O43615 452 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 LRCH4O75427 683 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 LRIG2O94898 1065 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 DLDP09622 509 aaKnown RBP13.75□□□□□ -0.21
VPS28-202ENST00000377348 H2AFZP0C0S5 128 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 TCF4P15884 667 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 DESP17661 470 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 MIPP30301 263 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 HOXA6P31267 233 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 DGKEP52429 567 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 SCAPQ12770 1279 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 CA9Q16790 459 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 FNDC3BQ53EP0 1204 aaKnown RBP13.75□□□□□ -0.21
VPS28-202ENST00000377348 EFHC2Q5JST6 749 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 RWDD4Q6NW29 188 aaKnown RBP13.75□□□□□ -0.21
VPS28-202ENST00000377348 SERPINA13PQ6UXR4 307 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 CYP4V2Q6ZWL3 525 aaPredicted RBP13.75□□□□□ -0.21
VPS28-202ENST00000377348 H2AFVQ71UI9 128 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 WDR5BQ86VZ2 330 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 SPC24Q8NBT2 197 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 ZNF564Q8TBZ8 553 aaPredicted RBP13.75□□□□□ -0.21
VPS28-202ENST00000377348 HMGB4Q8WW32 186 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 TTC17Q96AE7 1141 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 ALG14Q96F25 216 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 ZYG11BQ9C0D3 744 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 SLC6A17Q9H1V8 727 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 CD248Q9HCU0 757 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 POLMQ9NP87 494 aaPredicted RBP13.75□□□□□ -0.21
VPS28-202ENST00000377348 CTTNBP2NLQ9P2B4 639 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 ZNF212Q9UDV6 495 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 ANAPC7Q9UJX3 599 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 NEU3Q9UQ49 428 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 TBC1D30Q9Y2I9 924 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 FRYLO94915 3013 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 GPR179Q6PRD1 2367 aa13.75□□□□□ -0.21
VPS28-202ENST00000377348 MUC22E2RYF6 1773 aaPredicted RBP13.74□□□□□ -0.21
VPS28-202ENST00000377348 CREB3O43889 395 aa13.74□□□□□ -0.21
VPS28-202ENST00000377348 LILRB5O75023 590 aa13.74□□□□□ -0.21
VPS28-202ENST00000377348 RNF8O76064 485 aa13.74□□□□□ -0.21
VPS28-202ENST00000377348 MOCS3O95396 460 aa13.74□□□□□ -0.21
VPS28-202ENST00000377348 ATP5BP06576 529 aaKnown RBP13.74□□□□□ -0.21
VPS28-202ENST00000377348 EPHX1P07099 455 aa13.74□□□□□ -0.21
VPS28-202ENST00000377348 RHOCP08134 193 aa13.74□□□□□ -0.21
VPS28-202ENST00000377348 GABRG2P18507 467 aa13.74□□□□□ -0.21
VPS28-202ENST00000377348 NRG1Q02297 640 aaPredicted RBP13.74□□□□□ -0.21
VPS28-202ENST00000377348 ENPP2Q13822 863 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms