RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 SP100P23497 879 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 RPL9P32969 192 aaKnown RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 TBX4P57082 545 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 SUZ12Q15022 739 aaKnown RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 GLT6D1Q7Z4J2 308 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 EFCAB3Q8N7B9 438 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 PMM1Q92871 262 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 RERGQ96A58 199 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 MIEF2Q96C03 454 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 IDI2Q9BXS1 227 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 KCNN2Q9H2S1 579 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 INTS7Q9NVH2 962 aaKnown RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 DNAJC16Q9Y2G8 782 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 GAS2O43903 313 aaKnown RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 SCN2BO60939 215 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 KHDRBS3O75525 346 aaKnown RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 MT-CO1P00395 513 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 GNRH1P01148 92 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 ALOX12P18054 663 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 OR1E1P30953 314 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 AKT2P31751 481 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 CLCN3P51790 818 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 TBC1D25Q3MII6 688 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 AGKQ53H12 422 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 FBXO16Q8IX29 292 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 APOL4Q9BPW4 351 aa10.38□□□□□ -0.75
CLIP1-202ENST00000358808 CELF4Q9BZC1 486 aaKnown RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 UXTQ9UBK9 157 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-202ENST00000358808 ASNA1O43681 348 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 TKTL1P51854 596 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 BCL2L1Q07817 233 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 SNAP47Q5SQN1 464 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 FAM171A1Q5VUB5 890 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 MILR1Q7Z6M3 343 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 SYT12Q8IV01 421 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ZNF248Q8NDW4 579 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 TBX20Q9UMR3 447 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 AP4E1Q9UPM8 1137 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 TRIM64A6NGJ6 449 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 CCDC154A6NI56 674 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 CES2O00748 559 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ATP5BP06576 529 aaKnown RBP10.37□□□□□ -0.75
CLIP1-202ENST00000358808 PAGE2BQ5JRK9 111 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 KCNT1Q5JUK3 1230 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 PDPK2PQ6A1A2 396 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ACAD10Q6JQN1 1059 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 LIN54Q6MZP7 749 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 LLGL2Q6P1M3 1020 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 MPZL3Q6UWV2 235 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 PHF21BQ96EK2 531 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 PGLYRP2Q96PD5 576 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 MROH8Q9H579 483 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 KCNH7Q9NS40 1196 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ADGRA3Q8IWK6 1321 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 UBDO15205 165 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 RGL2O15211 777 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ZBTB14O43829 449 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 KPNA6O60684 536 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 MED26O95402 600 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 SERPINF2P08697 491 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 H2AFXP16104 143 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-202ENST00000358808 BCAP31P51572 246 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 DNAJC3Q13217 504 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 PKN1Q16512 942 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 MZT2AQ6P582 158 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 CLEC17AQ6ZS10 378 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ZNF621Q6ZSS3 439 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 TPGS1Q6ZTW0 290 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-202ENST00000358808 HOMEZQ8IX15 550 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ELMO1Q92556 727 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 CELF6Q96J87 481 aaKnown RBP10.37□□□□□ -0.75
CLIP1-202ENST00000358808 QRFPRQ96P65 431 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 SENP6Q9GZR1 1112 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ACOT9Q9Y305 439 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 FAM25EA8MYX2 175 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 RAD51CO43502 376 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 S100A9P06702 114 aaKnown RBP10.37□□□□□ -0.75
CLIP1-202ENST00000358808 TMEM253P0C7T8 217 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 NFKB1P19838 968 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 RASA1P20936 1047 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 HOXC12P31275 282 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 MARC1Q5VT66 337 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 METTL16Q86W50 562 aaKnown RBP10.37□□□□□ -0.75
CLIP1-202ENST00000358808 PARGQ86W56 976 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 LGI2Q8N0V4 545 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 CATSPER2Q96P56 530 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ANKEF1Q9NU02 776 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ALKBH4Q9NXW9 302 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 DDX43Q9NXZ2 648 aaKnown RBP10.37□□□□□ -0.75
CLIP1-202ENST00000358808 HEY2Q9UBP5 337 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 LIMD1Q9UGP4 676 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 ZNHIT2Q9UHR6 403 aa10.37□□□□□ -0.75
CLIP1-202ENST00000358808 MAGEA13PA6NCF6 341 aa10.36□□□□□ -0.75
CLIP1-202ENST00000358808 RAMP2O60895 175 aa10.36□□□□□ -0.75
CLIP1-202ENST00000358808 RPLP2P05387 115 aaKnown RBP10.36□□□□□ -0.75
CLIP1-202ENST00000358808 CCDC166P0CW27 439 aa10.36□□□□□ -0.75
CLIP1-202ENST00000358808 COX7A2P14406 83 aa10.36□□□□□ -0.75
CLIP1-202ENST00000358808 OMPP47874 163 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms