RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ATXN2LQ8WWM7 1075 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 TINF2Q9BSI4 451 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 SLC25A23Q9BV35 468 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 CXorf56Q9H5V9 222 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 FBXO10Q9UK96 956 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 EFCAB10A6NFE3 127 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 ENO4A6NNW6 628 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 ERI2A8K979 691 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 CXCL11O14625 94 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 DNALI1O14645 258 aaPredicted RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 ALADP13716 330 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 GYS1P13807 737 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 CCNA2P20248 432 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 SEC24CP53992 1094 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 PTENP60484 403 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 GCNT1Q02742 428 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 FNDC3BQ53EP0 1204 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 SETMARQ53H47 684 aaPredicted RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 SAMD4BQ5PRF9 694 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 N4BP2L1Q5TBK1 243 aaPredicted RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 PLEKHA7Q6IQ23 1121 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 MFSD7Q6UXD7 560 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 ZPBP2Q6X784 338 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 ENKURQ8TC29 256 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 TRPC4APQ8TEL6 797 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 ATG4AQ8WYN0 398 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 RORBQ92753 470 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 TRAPPC9Q96Q05 1148 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 TMEM121Q9BTD3 319 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 FAIM2Q9BWQ8 316 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 FAM126AQ9BYI3 521 aaPredicted RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 KLHL25Q9H0H3 589 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 TRPV2Q9Y5S1 764 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 TARBP1Q13395 1621 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 KCNH1O95259 989 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 TNFAIP8O95379 198 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 HIST1H2ABP04908 130 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 AKR1A1P14550 325 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 HOXB6P17509 224 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 EPHX2P34913 555 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 PSMD4P55036 377 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 PCBP1Q15365 356 aaKnown RBP eCLIP6.59□□□□□ -1.35
UPF2-201ENST00000356352 NDUFAF6Q330K2 333 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 CCDC157Q569K6 752 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 BHLHB9Q6PI77 547 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 KYAT3Q6YP21 454 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 HIST3H2AQ7L7L0 130 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 SAMD7Q7Z3H4 446 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 MTDHQ86UE4 582 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 MCOLN2Q8IZK6 566 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 OR52L1Q8NGH7 329 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 KAT2BQ92831 832 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 HIST1H2ACQ93077 130 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 MID1IP1Q9NPA3 183 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 KLHL1Q9NR64 748 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 OPTCQ9UBM4 332 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 GNPTGQ9UJJ9 305 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 PSME2Q9UL46 239 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 GSTK1Q9Y2Q3 226 aa6.59□□□□□ -1.35
UPF2-201ENST00000356352 TDRKHQ9Y2W6 561 aaKnown RBP6.59□□□□□ -1.35
UPF2-201ENST00000356352 A0A087X0T9 212 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 URADA6NGE7 173 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 NUDT14O95848 222 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 FAM228BP0C875 321 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 CCDC130P13994 396 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 ETS1P14921 441 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 TUBP50607 506 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 NEK3P51956 506 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 HK2P52789 917 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 ATP12AP54707 1039 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 SMIM11AP58511 58 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 BIKQ13323 160 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 FRG1Q14331 258 aaKnown RBP6.59□□□□□ -1.36
UPF2-201ENST00000356352 MFSD10Q14728 455 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 CBWD6Q4V339 395 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 INO80DQ53TQ3 878 aaPredicted RBP6.59□□□□□ -1.36
UPF2-201ENST00000356352 ZNF57Q68EA5 555 aaPredicted RBP6.59□□□□□ -1.36
UPF2-201ENST00000356352 NYAP1Q6ZVC0 841 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 NOA1Q8NC60 698 aaKnown RBP6.59□□□□□ -1.36
UPF2-201ENST00000356352 ABCC13Q9NSE7 274 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 KBTBD4Q9NVX7 518 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 NDOR1Q9UHB4 597 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 TSPAN16Q9UKR8 245 aa6.59□□□□□ -1.36
UPF2-201ENST00000356352 PHGDHO43175 533 aaKnown RBP6.58□□□□□ -1.36
UPF2-201ENST00000356352 CAPN1P07384 714 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 FDPSP14324 419 aaKnown RBP6.58□□□□□ -1.36
UPF2-201ENST00000356352 GSTM5P46439 218 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 TRAF3Q13114 568 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 ORC1Q13415 861 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 NAA30Q147X3 362 aaPredicted RBP6.58□□□□□ -1.36
UPF2-201ENST00000356352 SLC15A2Q16348 729 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 IZUMO2Q6UXV1 221 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 GATAD2AQ86YP4 633 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 SYT12Q8IV01 421 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 FAM20CQ8IXL6 584 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 FAM126BQ8IXS8 530 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 CENPIQ92674 756 aaPredicted RBP6.58□□□□□ -1.36
UPF2-201ENST00000356352 ZKSCAN4Q969J2 545 aaPredicted RBP6.58□□□□□ -1.36
UPF2-201ENST00000356352 Q96MT0 163 aa6.58□□□□□ -1.36
UPF2-201ENST00000356352 SMAD5Q99717 465 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms