RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 FAXCQ5TGI0 409 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 SDHAF4Q5VUM1 108 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 KCNT2Q6UVM3 1135 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 C4orf50Q6ZRC1 276 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 TAC4Q86UU9 113 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 CEP57Q86XR8 500 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 PSTKQ8IV42 348 aaKnown RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 SCN4BQ8IWT1 228 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 CCDC110Q8TBZ0 833 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 RTP4Q96DX8 246 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 GAS2L1Q99501 681 aaPredicted RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 WDR83Q9BRX9 315 aaKnown RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 GPR62Q9BZJ7 368 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 RABEP2Q9H5N1 569 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 ELAC1Q9H777 363 aaKnown RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 MARCH5Q9NX47 278 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 SHROOM3Q8TF72 1996 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 COL4A4P53420 1690 aaPredicted RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 FOXO6A8MYZ6 492 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 NT5C1B-RDH14C9J2C7 533 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 H3BRJ5 948 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 ALOX15BO15296 676 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 COL6A1P12109 1028 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 CYP2C18P33260 490 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 NR2C2P49116 596 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 SLC11A1P49279 550 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 GPR15P49685 360 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 SLC5A3P53794 718 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 DPYSQ14117 519 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 KCNJ11Q14654 390 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 SETDB1Q15047 1291 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 SLC45A4Q5BKX6 768 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 FAM171A1Q5VUB5 890 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 LRRC31Q6UY01 552 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 CEP128Q6ZU80 1094 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 CENPUQ71F23 418 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 TP53INP2Q8IXH6 220 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 IRGQQ8WZA9 623 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 PGAP3Q96FM1 320 aaPredicted RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 OLFM3Q96PB7 478 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 PGLYRP2Q96PD5 576 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 COLEC11Q9BWP8 271 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 SEZ6LQ9BYH1 1024 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 ROPN1BQ9BZX4 212 aaPredicted RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 ROPN1Q9HAT0 212 aaPredicted RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 RCOR3Q9P2K3 495 aaPredicted RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 XPO7Q9UIA9 1087 aaKnown RBP9.52□□□□□ -0.89
ATG4A-202ENST00000345734 FBXW11Q9UKB1 542 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 ADAM28Q9UKQ2 775 aa9.52□□□□□ -0.89
ATG4A-202ENST00000345734 CFAP69A5D8W1 941 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 EEF2KO00418 725 aaKnown RBP9.51□□□□□ -0.89
ATG4A-202ENST00000345734 NDC80O14777 642 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 CPNE3O75131 537 aaKnown RBP9.51□□□□□ -0.89
ATG4A-202ENST00000345734 VAV1P15498 845 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 ACTN2P35609 894 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 MDH1P40925 334 aaKnown RBP9.51□□□□□ -0.89
ATG4A-202ENST00000345734 ARL4CP56559 192 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 FAAP100Q0VG06 881 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 XRCC4Q13426 336 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 BIRC2Q13490 618 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 TNFAIP8L3Q5GJ75 292 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 MFSD5Q6N075 450 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 RFX8Q6ZV50 586 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 DEFB128Q7Z7B8 93 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 TMEM173Q86WV6 379 aaPredicted RBP9.51□□□□□ -0.89
ATG4A-202ENST00000345734 CDKL3Q8IVW4 592 aaPredicted RBP9.51□□□□□ -0.89
ATG4A-202ENST00000345734 CRIPAKQ8N1N5 446 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 MDM1Q8TC05 714 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 DQX1Q8TE96 717 aaKnown RBP9.51□□□□□ -0.89
ATG4A-202ENST00000345734 NTAN1Q96AB6 310 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 QKIQ96PU8 341 aaKnown RBP eCLIP9.51□□□□□ -0.895e-8■■■■■ 36.1
ATG4A-202ENST00000345734 SLC9A7Q96T83 725 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 LGMNQ99538 433 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 HIPK3Q9H422 1215 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 PNPLA8Q9NP80 782 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 PAK5Q9P286 719 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 SLC12A6Q9UHW9 1150 aa9.51□□□□□ -0.89
ATG4A-202ENST00000345734 TBKBP1A7MCY6 615 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SYN3O14994 580 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 EIF3HO15372 352 aaKnown RBP eCLIP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TRAPPC3O43617 180 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 DGKIO75912 1065 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 AGTP01019 485 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 ABHD2P08910 425 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 CXCR3P49682 368 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 ARPP19P56211 112 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 GPX6P59796 221 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 YWHAGP61981 247 aaKnown RBP eCLIP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SCAPQ12770 1279 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SEMA3BQ13214 749 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 DDR2Q16832 855 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 BBS9Q3SYG4 887 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 TRIM60Q495X7 471 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 CTXN3Q4LDR2 81 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SLC39A5Q6ZMH5 540 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SCD5Q86SK9 330 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 CROCCP2Q86T23 111 aa9.5□□□□□ -0.89
ATG4A-202ENST00000345734 DCP1BQ8IZD4 617 aaKnown RBP9.5□□□□□ -0.89
ATG4A-202ENST00000345734 SCML4Q8N228 414 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms