RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CHSY1Q86X52 802 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 KCTD13Q8WZ19 329 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 TRIB2Q92519 343 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 NT5C3BQ969T7 300 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 ADAM2Q99965 735 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 EBF4Q9BQW3 602 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 UNKQ9C0B0 810 aaKnown RBP10.6□□□□□ -0.71
LIMA1-201ENST00000341247 NOD1Q9Y239 953 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 CHD7Q9P2D1 2997 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 ITGA2BP08514 1039 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 GM2AP17900 193 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 ARCQ7LC44 396 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 IFNL1Q8IU54 200 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 SCN4BQ8IWT1 228 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 SMARCD1Q96GM5 515 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 RTP3Q9BQQ7 232 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 CHRAC1Q9NRG0 131 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 TRMT13Q9NUP7 481 aaKnown RBP10.6□□□□□ -0.71
LIMA1-201ENST00000341247 FBXW11Q9UKB1 542 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 SHROOM3Q8TF72 1996 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 UNCXA6NJT0 531 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 PGAM1P18669 254 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 STX3Q13277 289 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 CTC1Q2NKJ3 1217 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 ARL13BQ3SXY8 428 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 PREPLQ4J6C6 727 aaPredicted RBP10.6□□□□□ -0.71
LIMA1-201ENST00000341247 C4orf22Q6V702 233 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 OR10T2Q8NGX3 314 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 SPATA22Q8NHS9 363 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 NSMCE1Q8WV22 266 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 ZNF778Q96MU6 729 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 SHCBP1LQ9BZQ2 653 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 ATXN3LQ9H3M9 355 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 VANGL2Q9ULK5 521 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 ZNF487B1APH4 448 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 DUSP11O75319 330 aaKnown RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 ESRRAP11474 423 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 CD68P34810 354 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 GLUD2P49448 558 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 FLT3LGP49771 235 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 UPP1Q16831 310 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 HSF5Q4G112 596 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 SWT1Q5T5J6 900 aaKnown RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 RINLQ6ZS11 566 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 FBXO27Q8NI29 283 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 SENP6Q9GZR1 1112 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 CNGB3Q9NQW8 809 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 GYG2O15488 501 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 POLBP06746 335 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 ASGR1P07306 291 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 BPGMP07738 259 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 ELNP15502 786 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 SKIV2L2P42285 1042 aaKnown RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 ATG16L1Q676U5 607 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 SMYD5Q6GMV2 418 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 STRA8Q7Z7C7 330 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 SAPCD2Q86UD0 394 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 CRLF3Q8IUI8 442 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 GPR152Q8TDT2 470 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 CERS2Q96G23 380 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 GORASP1Q9BQQ3 440 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 TMEM216Q9P0N5 145 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 RCOR3Q9P2K3 495 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 MTO1Q9Y2Z2 717 aaKnown RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 ARHGAP42A6NI28 874 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 HHLA1C9JL84 531 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 ATP5HO75947 161 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 FBXO21O94952 628 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 MT-CYBP00156 380 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 PTPN4P29074 926 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 PCSK1P29120 753 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 HOXC8P31273 242 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 CRHR1P34998 444 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 GRIK1P39086 918 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 SERPINB9P50453 376 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 RIPK1Q13546 671 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 PAFAH1B3Q15102 231 aaKnown RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 ACVR1CQ8NER5 493 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 MTBPQ96DY7 904 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 PPP1R36Q96LQ0 422 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 NUDCD1Q96RS6 583 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 EPAS1Q99814 870 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 MLPHQ9BV36 600 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 CADM1Q9BY67 442 aaKnown RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 DENND2DQ9H6A0 471 aaPredicted RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 ZFYVE28Q9HCC9 887 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 BFARQ9NZS9 450 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 CPSF2Q9P2I0 782 aaKnown RBP10.59□□□□□ -0.71
LIMA1-201ENST00000341247 CDH9Q9ULB4 789 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 DNAJC16Q9Y2G8 782 aa10.59□□□□□ -0.71
LIMA1-201ENST00000341247 MANSC4A6NHS7 340 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 RASSF2P50749 326 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 NIPAL4Q0D2K0 466 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 UBAP2LQ14157 1087 aaKnown RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 PDZD4Q76G19 769 aaPredicted RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 TREML1Q86YW5 311 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 PSTKQ8IV42 348 aaKnown RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 C10orf107Q8IVU9 208 aa10.58□□□□□ -0.72
LIMA1-201ENST00000341247 PLD6Q8N2A8 252 aaKnown RBP10.58□□□□□ -0.72
LIMA1-201ENST00000341247 PNPLA1Q8N8W4 532 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms