RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 POC1B-GALNT4F8VUJ3 575 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 MTSS1O43312 755 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 CDH16O75309 829 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 FGF18O76093 207 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 IGLV3-27P01718 113 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 ATP2A2P16615 1042 aaKnown RBP13.74□□□□□ -0.21
HMGB1-202ENST00000339872 HMGA1P17096 107 aaKnown RBP13.74□□□□□ -0.21
HMGB1-202ENST00000339872 COG7P83436 770 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 PLD1Q13393 1074 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 EMC10Q5UCC4 262 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 RAP1GAP2Q684P5 730 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 LRRC31Q6UY01 552 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 ZNF534Q76KX8 674 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 ARHGAP12Q8IWW6 846 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 AGGF1Q8N302 714 aaeCLIP13.74□□□□□ -0.214e-7■■■■□ 23
HMGB1-202ENST00000339872 FIBCD1Q8N539 461 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 ATPAF2Q8N5M1 289 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 LZTR1Q8N653 840 aa13.74□□□□□ -0.21
HMGB1-202ENST00000339872 PDCD7Q8N8D1 485 aaKnown RBP13.74□□□□□ -0.21
HMGB1-202ENST00000339872 RTL3Q8N8U3 475 aaKnown RBP13.74□□□□□ -0.21
HMGB1-202ENST00000339872 CDK5RAP1Q96SZ6 601 aaKnown RBP13.74□□□□□ -0.21
HMGB1-202ENST00000339872 ELF1P32519 619 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 ATP5C1P36542 298 aaKnown RBP13.73□□□□□ -0.21
HMGB1-202ENST00000339872 GRIA1P42261 906 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 RING1Q06587 406 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 ZBTB17Q13105 803 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 VEPH1Q14D04 833 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 PARP6Q2NL67 630 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 TNFAIP8L3Q5GJ75 292 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 ARHGAP36Q6ZRI8 547 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 UBE2Q1Q7Z7E8 422 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 TADA2BQ86TJ2 420 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 OVCA2Q8WZ82 227 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 AGAP3Q96P47 875 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 CXXC1Q9P0U4 656 aaPredicted RBP13.73□□□□□ -0.21
HMGB1-202ENST00000339872 IGSF9Q9P2J2 1179 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 DNMT3LQ9UJW3 386 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 ZNF840PA6NDX5 716 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 ATP5DP30049 168 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 IRAK1P51617 712 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 KPNA1P52294 538 aaPredicted RBP13.73□□□□□ -0.21
HMGB1-202ENST00000339872 GNGT1P63211 74 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 SARNPP82979 210 aaKnown RBP13.73□□□□□ -0.21
HMGB1-202ENST00000339872 HTRA4P83105 476 aaPredicted RBP13.73□□□□□ -0.21
HMGB1-202ENST00000339872 GUCY1A3Q02108 690 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 TWF1Q12792 350 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 TMED2Q15363 201 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 TFAP2DQ7Z6R9 452 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 ZNF683Q8IZ20 524 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 FBF1Q8TES7 1133 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 MRRFQ96E11 262 aaKnown RBP13.73□□□□□ -0.21
HMGB1-202ENST00000339872 CFAP36Q96G28 342 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 SELENOSQ9BQE4 189 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 ZYG11BQ9C0D3 744 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 SLC39A8Q9C0K1 460 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 XAB2Q9HCS7 855 aaKnown RBP13.73□□□□□ -0.21
HMGB1-202ENST00000339872 EIF2B3Q9NR50 452 aaKnown RBP13.73□□□□□ -0.21
HMGB1-202ENST00000339872 RSPH14Q9UHP6 348 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 LGALS13Q9UHV8 139 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 RABGEF1Q9UJ41 708 aa13.73□□□□□ -0.21
HMGB1-202ENST00000339872 TEX28O15482 410 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 ZBTB24O43167 697 aaPredicted RBP13.72□□□□□ -0.21
HMGB1-202ENST00000339872 SHOX2O60902 331 aaPredicted RBP13.72□□□□□ -0.21
HMGB1-202ENST00000339872 TSHRP16473 764 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 GCAP28676 217 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 MAGEA3P43357 314 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 KCNQ1P51787 676 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 CDK16Q00536 496 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 EFTUD2Q15029 972 aaKnown RBP eCLIP13.72□□□□□ -0.215e-16■■□□□ 13.9
HMGB1-202ENST00000339872 HECTD3Q5T447 861 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 SNX30Q5VWJ9 437 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 NUGGCQ68CJ6 796 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 TAOK1Q7L7X3 1001 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 CHSY1Q86X52 802 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 RIBC1Q8N443 379 aaPredicted RBP13.72□□□□□ -0.21
HMGB1-202ENST00000339872 ARHGEF2Q92974 986 aaKnown RBP13.72□□□□□ -0.21
HMGB1-202ENST00000339872 ZBP1Q9H171 429 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.72□□□□□ -0.212e-6■□□□□ 10.8
HMGB1-202ENST00000339872 TRPM5Q9NZQ8 1165 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 HBS1LQ9Y450 684 aaKnown RBP13.72□□□□□ -0.21
HMGB1-202ENST00000339872 INSL5Q9Y5Q6 135 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 WASH4PA8MWX3 477 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 FOXO6A8MYZ6 492 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 COCHO43405 550 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 CPP00450 1065 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 JCHAINP01591 159 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 LINC00271P0C7V0 271 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 ZNF33AQ06730 810 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 TEX44Q53QW1 395 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 ALFQ53S48 1182 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 FBXL22Q6P050 247 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 NLRP14Q86W24 1093 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 CYP4X1Q8N118 509 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 USP33Q8TEY7 942 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 MYRFLQ96LU7 910 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 VAT1Q99536 393 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 MCOLN1Q9GZU1 580 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 GBA3Q9H227 469 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 ACSS3Q9H6R3 686 aa13.72□□□□□ -0.21
HMGB1-202ENST00000339872 EURLQ9NYK6 297 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms