RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CAP1Q01518 475 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 SYTL2Q9HCH5 934 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 IARS2Q9NSE4 1012 aaKnown RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 CPQQ9Y646 472 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 ZNF831Q5JPB2 1677 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 ASPAP45381 313 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 KCNJ1P48048 391 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 SERPINB8P50452 374 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 CSE1LP55060 971 aaKnown RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 PHKG1Q16816 387 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 MMGT1Q8N4V1 131 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 ARL14EPQ8N8R7 260 aaPredicted RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 SLC4A11Q8NBS3 891 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 COG1Q8WTW3 980 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 BCAS3Q9H6U6 928 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 SMARCAL1Q9NZC9 954 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 PCDHGB4Q9UN71 923 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 SMG5Q9UPR3 1016 aaKnown RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 SHANK3Q9BYB0 1731 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 A0A1W2PQ67 120 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 PJA2O43164 708 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 CYP2A7P20853 494 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 UBXN2BQ14CS0 331 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 PARP6Q2NL67 630 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 ATG4AQ8WYN0 398 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 TRMT61BQ9BVS5 477 aaKnown RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 MINDY3Q9H8M7 445 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 RNF112Q9ULX5 631 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 SCAMP3O14828 347 aaKnown RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 CALCAP01258 141 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 MAPK9P45984 424 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 TGM3Q08188 693 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 TEAD4Q15561 434 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 SPANXN3Q5MJ09 141 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 LRIG3Q6UXM1 1119 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 XYLT1Q86Y38 959 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 FCRL2Q96LA5 508 aaPredicted RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 PANX3Q96QZ0 392 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 CDCA3Q99618 268 aaPredicted RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 MLPHQ9BV36 600 aaPredicted RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 ISCUQ9H1K1 167 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 KANSL1LA0AUZ9 987 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 SYCE1LA8MT33 242 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 TADA3O75528 432 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 TRIM16O95361 564 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 GJB6O95452 261 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 RFC1P35251 1148 aaPredicted RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 DOK6Q6PKX4 331 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 ANKS1BQ7Z6G8 1248 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 LNX1Q8TBB1 728 aaPredicted RBP10.38□□□□□ -0.75
USP54-201ENST00000339859 ACTL9Q8TC94 416 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 STK32AQ8WU08 396 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 AUTS2Q8WXX7 1259 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 TMEM159Q96B96 161 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 FBXL18Q96ME1 805 aa10.38□□□□□ -0.75
USP54-201ENST00000339859 BTNL10A8MVZ5 291 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 MAGEC1O60732 1142 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 CHRNA1P02708 482 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 HNRNPA1P09651 372 aaKnown RBP eCLIP10.37□□□□□ -0.75
USP54-201ENST00000339859 MPP3Q13368 585 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 ZDHHC20Q5W0Z9 365 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 POLNQ7Z5Q5 900 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 DNAJB7Q7Z6W7 309 aaPredicted RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 STK40Q8N2I9 435 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 TEKT4Q8WW24 435 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 ERLEC1Q96DZ1 483 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 TFR2Q9UP52 801 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 ERI2A8K979 691 aaKnown RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 ATG13O75143 517 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 ASLP04424 464 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 CNTFP26441 200 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 MAGEC3Q8TD91 643 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 IRX2Q9BZI1 471 aaPredicted RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 LMAN2LQ9H0V9 348 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 TRABDQ9H4I3 376 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 PRDM10Q9NQV6 1147 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 IGKV6D-21A0A0A0MT36 114 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 FOSL2P15408 326 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 PGAM1P18669 254 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 DGKGP49619 791 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 RAP1GDS1P52306 607 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 TBX2Q13207 712 aaPredicted RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 GSPT2Q8IYD1 628 aaKnown RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 GLMNQ92990 594 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 LPIN3Q9BQK8 851 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 DMAC2Q9NW81 257 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 UBP1Q9NZI7 540 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 GJD2Q9UKL4 321 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 PDZK1P1A8MUH7 402 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 H3BMM5 538 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 NOL3O60936 208 aaKnown RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 PRNPP04156 253 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 KELP23276 732 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 GPR1P46091 355 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 GATMP50440 423 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 SERPINH1P50454 418 aaKnown RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.37□□□□□ -0.75
USP54-201ENST00000339859 SUGP1Q8IWZ8 645 aaKnown RBP10.37□□□□□ -0.75
USP54-201ENST00000339859 KLHL23Q8NBE8 558 aa10.37□□□□□ -0.75
USP54-201ENST00000339859 B3GNT5Q9BYG0 378 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms