RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 VPS45Q9NRW7 570 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 KLC4Q9NSK0 619 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 C3orf18Q9UK00 162 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PSME2Q9UL46 239 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 USP15Q9Y4E8 981 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TNPO3Q9Y5L0 923 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RTTNQ86VV8 2226 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 IL18RAPO95256 599 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 FESP07332 822 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ITIH1P19827 911 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ENDOUP21128 410 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RORAP35398 523 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SMARCB1Q12824 385 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 MPP3Q13368 585 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 HIST2H2ACQ16777 129 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 NDUFAF6Q330K2 333 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 VPS26BQ4G0F5 336 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 EOGTQ5NDL2 527 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 HIST2H2AA3Q6FI13 130 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 NIPAL1Q6NVV3 410 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RAD9BQ6WBX8 426 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ILDR2Q71H61 639 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SHCBP1LQ9BZQ2 653 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ATXN3LQ9H3M9 355 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ANTXR1Q9H6X2 564 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PAK5Q9P286 719 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CRYL1Q9Y2S2 319 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 A0A087WZ62 844 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ATP9AO75110 1047 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SRGNP10124 158 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 AMD1P17707 334 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PTGS1P23219 599 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TECP42680 631 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 MARSP56192 900 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 EFR3AQ14156 821 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CA9Q16790 459 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 FNDC3BQ53EP0 1204 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 FAM182AQ5T1J6 154 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 MZT2AQ6P582 158 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TRIM67Q6ZTA4 783 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 KANSL1Q7Z3B3 1105 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CDK20Q8IZL9 346 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 XXYLT1Q8NBI6 393 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 UXS1Q8NBZ7 420 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PJA1Q8NG27 643 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TFB1MQ8WVM0 346 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 BORCS6Q96GS4 357 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 BBS4Q96RK4 519 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RAB9BQ9NP90 201 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 GPRC5CQ9NQ84 441 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TBC1D14Q9P2M4 693 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SRRDQ9UH36 339 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CORO1CQ9ULV4 474 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 KLHL20Q9Y2M5 609 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TSC22D4Q9Y3Q8 395 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 A0A0X1KG70 313 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 GPAA1O43292 621 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PRPF3O43395 683 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 DNAJB6O75190 326 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 B3GAT3O94766 335 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 THRAP10827 490 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF12P17014 697 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 NR2C2P49116 596 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PSMC5P62195 406 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ADCK5Q3MIX3 580 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 DGKKQ5KSL6 1271 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CACHD1Q5VU97 1274 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TSHZ3Q63HK5 1081 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RWDD4Q6NW29 188 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF662Q6ZS27 426 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 NUDCD3Q8IVD9 361 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CENPTQ96BT3 561 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CEP295NLQ96MC4 621 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 RPRD1AQ96P16 312 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 C9orf16Q9BUW7 83 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ARHGAP28Q9P2N2 729 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PSMC3IPQ9P2W1 217 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 ING4Q9UNL4 249 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 V9GYQ6 96 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SPTBN1Q01082 2364 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 POLBP06746 335 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 THP07101 528 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 MMP3P08254 477 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CCNYL3P0C7X3 344 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 TCF4P15884 667 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 NMT1P30419 496 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 GNA12Q03113 381 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CNTN1Q12860 1018 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 MEA1Q16626 185 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 VASH1Q7L8A9 365 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 LCORLQ8N3X6 602 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 P2RX5Q93086 422 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 KLHL5Q96PQ7 755 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 CAB39LQ9H9S4 337 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 DDX28Q9NUL7 540 aaKnown RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 SCN2AQ99250 2005 aa3.35□□□□□ -1.87
CSMD3-202ENST00000339701 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.35□□□□□ -1.87
CSMD3-202ENST00000339701 PDXKO00764 312 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms