RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 OBSL1O75147 1896 aa15.33■□□□□ 0.05
CCDC88C-202ENST00000334448 ANAPC1Q9H1A4 1944 aa15.33■□□□□ 0.05
CCDC88C-202ENST00000334448 A0A1W2PPC1 479 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 A0A1W2PRU2 124 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 F5H5T6 163 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 NRG2O14511 850 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 ZNF197O14709 1029 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 KCNN4O15554 427 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 HMBSP08397 361 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 MYL4P12829 197 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 VAV1P15498 845 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 RPL22P35268 128 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 ADCY8P40145 1251 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 HLTFQ14527 1009 aaKnown RBP eCLIP15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 MORF4L2Q15014 288 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 ARHGAP15Q53QZ3 475 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 RABGAP1LQ5R372 815 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 RNF43Q68DV7 783 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 HEATR6Q6AI08 1181 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 HIBCHQ6NVY1 386 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 HTR3DQ70Z44 454 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 CHST9Q7L1S5 443 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 PCGF5Q86SE9 256 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 HOOK3Q86VS8 718 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 FBXO25Q8TCJ0 367 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 IGSF8Q969P0 613 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 FMO2Q99518 471 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 FERMT1Q9BQL6 677 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 TXLNGYQ9BZA5 131 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 TRIM31Q9BZY9 425 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 ADAM7Q9H2U9 754 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 TRPC7Q9HCX4 862 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 GKN1Q9NS71 199 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 LMCD1Q9NZU5 365 aa15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 AGO1Q9UL18 857 aaKnown RBP15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 FARP1Q9Y4F1 1045 aaPredicted RBP15.33■□□□□ 0.04
CCDC88C-202ENST00000334448 TMEM265A0A087WTH1 108 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 A0A0A0MRY4 1105 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 PER2O15055 1255 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 OPHN1O60890 802 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 IFNB1P01574 187 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 CKMP06732 381 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 ZSCAN5DPP0CG00 497 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 SLC6A4P31645 630 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 HSPA9P38646 679 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 NRIP1P48552 1158 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 YBEYP58557 167 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 ZXDBP98169 803 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 GPS1Q13098 491 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 SPDYCQ5MJ68 293 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 RNASEH2BQ5TBB1 312 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 GSPT2Q8IYD1 628 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 CPXM2Q8N436 756 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 VN1R2Q8NFZ6 395 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 PRICKLE1Q96MT3 831 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 SPATA13Q96N96 652 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 RPRD1AQ96P16 312 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 VAT1Q99536 393 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 LGMNQ99538 433 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 HINFPQ9BQA5 517 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 SLC46A2Q9BY10 475 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 NOL6Q9H6R4 1146 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 CERS4Q9HA82 394 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 ZNF446Q9NWS9 450 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 HCFC1R1Q9NWW0 138 aa15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 MTRF1LQ9UGC7 380 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 TPX2Q9ULW0 747 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-202ENST00000334448 ATG2AQ2TAZ0 1938 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 PPFIA2O75334 1257 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CLDN11O75508 207 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CNTN5O94779 1100 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 STK10O94804 968 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CSPG5O95196 566 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 MAP3K6O95382 1288 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CCNCP24863 283 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 IRAK1P51617 712 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 PLTPP55058 493 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CDH4P55283 916 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 IFI35P80217 286 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 TNK2Q07912 1038 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 WASHC5Q12768 1159 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 TRIP13Q15645 432 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 SLC5A9Q2M3M2 681 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 PARP15Q460N3 678 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 ALFQ53S48 1182 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 IZUMO3Q5VZ72 239 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CEP128Q6ZU80 1094 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 RELL1Q8IUW5 271 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 DENND1CQ8IV53 801 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 KLHDC8BQ8IXV7 354 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CMTM8Q8IZV2 173 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 EFHBQ8N7U6 833 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 ZSCAN18Q8TBC5 510 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 WBP2Q969T9 261 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 P2RY11Q96G91 374 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CYP2S1Q96SQ9 504 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 NSUN3Q9H649 340 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 C10orf88Q9H8K7 445 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 VIPAS39Q9H9C1 493 aa15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 MPP6Q9NZW5 540 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms