RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 POLR1DQ9Y2S0 133 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PPP2R3BQ9Y5P8 575 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 XRN1Q8IZH2 1706 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TRIM64BA6NI03 449 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 HDAC3O15379 428 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RBMXL2O75526 392 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 IL6P05231 212 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PPP3CCP48454 512 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PSME3P61289 254 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CTDSPL2Q05D32 466 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF543Q08ER8 600 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 VEPH1Q14D04 833 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 C5orf22Q49AR2 442 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 MIIPQ5JXC2 388 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 STRIP1Q5VSL9 837 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 NSMFQ6X4W1 530 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RASSF6Q6ZTQ3 369 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ATG9AQ7Z3C6 839 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 DHFR2Q86XF0 187 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CAMKK1Q8N5S9 505 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RASGEF1AQ8N9B8 481 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 C19orf18Q8NEA5 215 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 FBXO25Q8TCJ0 367 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 SLC9A6Q92581 669 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 KAT2BQ92831 832 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PSMB7Q99436 277 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TLE6Q9H808 572 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 EURLQ9NYK6 297 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 GTSE1Q9NYZ3 720 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 MAGED2Q9UNF1 606 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 BTBD3Q9Y2F9 522 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PTPN22Q9Y2R2 807 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ACOT9Q9Y305 439 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RAP2CQ9Y3L5 183 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 METTL21EPA6NDL7 271 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 SNPHO15079 494 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ZMYND10O75800 440 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 VNN2O95498 520 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TPBGLP0DKB5 382 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CLUP10909 449 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 STX4Q12846 297 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 COX10Q12887 443 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CYB5R4Q7L1T6 521 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PQLC1Q8N2U9 271 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PLIN2Q99541 437 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 EVA1AQ9H8M9 152 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TRPM5Q9NZQ8 1165 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CCDC59Q9P031 241 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RPS6KB2Q9UBS0 482 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 MORF4L1Q9UBU8 362 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PPIEQ9UNP9 301 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CICQ96RK0 1608 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RNF103O00237 685 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ATP4BP51164 291 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 GPC3P51654 580 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 MOGQ16653 247 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 HACD4Q5VWC8 232 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 MICU2Q8IYU8 434 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF512Q96ME7 567 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CRAMP1Q96RY5 1269 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 MSTO1Q9BUK6 570 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PUS7LQ9H0K6 701 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 IMPAD1Q9NX62 359 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TRMT6Q9UJA5 497 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PTPRJQ12913 1337 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RGSL1A5PLK6 1076 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 SMIM22K7EJ46 135 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PHGDHO43175 533 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 FOXO3O43524 673 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 UGT2B11O75310 529 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CTDNEP1O95476 244 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TGFB3P10600 412 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 GPD2P43304 727 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 IREB2P48200 963 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 EIF3EP60228 445 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ESPL1Q14674 2120 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 SEC23AQ15436 765 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 UNC93AQ86WB7 457 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 C8orf59Q8N0T1 100 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RHBDF1Q96CC6 855 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CNDP1Q96KN2 507 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 FAM111AQ96PZ2 611 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CNTNAP4Q9C0A0 1308 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ADA2Q9NZK5 511 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 HEY2Q9UBP5 337 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TPRP12270 2363 aaKnown RBP5.34□□□□□ -1.55
SCN1A-201ENST00000303395 TMCC2O75069 709 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CALCAP01258 141 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 CYBBP04839 570 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ERVK-10P10266 1014 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RBP3P10745 1247 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PCSK1P29120 753 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 ANTXR2P58335 489 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 RBBP4Q09028 425 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 PKN1Q16512 942 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 KCNT1Q5JUK3 1230 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 WDR49Q8IV35 697 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 USHBP1Q8N6Y0 703 aa5.34□□□□□ -1.55
SCN1A-201ENST00000303395 MKL1Q969V6 931 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms