RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MARK4Q96L34 752 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 NCKIPSDQ9NZQ3 722 aa15.7■□□□□ 0.1
SHH-201ENST00000297261 E5RI56 91 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 GOLGA8TH3BQL2 631 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 UBDO15205 165 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 GP5P40197 560 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 SPOUT1Q5T280 376 aaKnown RBP15.69■□□□□ 0.1
SHH-201ENST00000297261 TRAF7Q6Q0C0 670 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 TMC5Q6UXY8 1006 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 OR5B17Q8NGF7 314 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 NAT14Q8WUY8 206 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 ARHGAP28Q9P2N2 729 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 SATB2Q9UPW6 733 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 LAMB1P07942 1786 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 MANSC4A6NHS7 340 aaPredicted RBP15.69■□□□□ 0.1
SHH-201ENST00000297261 AP3B1O00203 1094 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 TM7SF2O76062 418 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 DEFA1P59665 94 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 DEFA3P59666 94 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 ARHGEF6Q15052 776 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 AMHR2Q16671 573 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 BNIPLQ7Z465 357 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 AMIGO2Q86SJ2 522 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 RIN3Q8TB24 985 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 LRRN4Q8WUT4 740 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 DHX33Q9H6R0 707 aaKnown RBP15.69■□□□□ 0.1
SHH-201ENST00000297261 GPBP1L1Q9HC44 474 aaPredicted RBP15.69■□□□□ 0.1
SHH-201ENST00000297261 TXNRD2Q9NNW7 524 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 MYH8P13535 1937 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 DDX60LQ5H9U9 1706 aaKnown RBP15.69■□□□□ 0.1
SHH-201ENST00000297261 B4GALT5O43286 388 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 PARNO95453 639 aaKnown RBP15.69■□□□□ 0.1
SHH-201ENST00000297261 MGAT1P26572 445 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 NAGLUP54802 743 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 GTF2H3Q13889 308 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 DCAF4L1Q3SXM0 396 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 NPNTQ6UXI9 565 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 KYAT3Q6YP21 454 aaKnown RBP15.69■□□□□ 0.1
SHH-201ENST00000297261 NANOGNBQ7Z5D8 188 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 COLGALT1Q8NBJ5 622 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 RMI1Q9H9A7 625 aa15.69■□□□□ 0.1
SHH-201ENST00000297261 APOC4-APOC2K7ER74 178 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 PIGNO95427 931 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 APOC2P02655 101 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 COX4I1P13073 169 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 DHFR2Q86XF0 187 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 SCN4BQ8IWT1 228 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 DNAJB3Q8WWF6 145 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 ZFYVE19Q96K21 471 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 MFSD14AQ96MC6 490 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 SCN3BQ9NY72 215 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 SORCS3Q9UPU3 1222 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 USP12O75317 370 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 ASMTLO95671 621 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 LSM8O95777 96 aaKnown RBP15.68■□□□□ 0.1
SHH-201ENST00000297261 SERPINA6P08185 405 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 CCDC130P13994 396 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 ARPP19P56211 112 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 FSTL1Q12841 308 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 PDK2Q15119 407 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 TAF5Q15542 800 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 PERM1Q5SV97 790 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 CROCCP3Q8IVE0 287 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 P3H2Q8IVL5 708 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 NOL6Q9H6R4 1146 aaKnown RBP15.68■□□□□ 0.1
SHH-201ENST00000297261 TRPC7Q9HCX4 862 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 S100A14Q9HCY8 104 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 PRPF4O43172 522 aaKnown RBP eCLIP15.68■□□□□ 0.13e-6■■■■□ 19.9
SHH-201ENST00000297261 WDR47O94967 919 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 PRKAA1Q13131 559 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 STILQ15468 1287 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 ZACNQ401N2 412 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 IQSEC1Q6DN90 963 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 AAGABQ6PD74 315 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 PQLC1Q8N2U9 271 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 TNIP2Q8NFZ5 429 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 PHF21BQ96EK2 531 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 THUMPD3Q9BV44 507 aaKnown RBP15.68■□□□□ 0.1
SHH-201ENST00000297261 PTPRHQ9HD43 1115 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 DRG1Q9Y295 367 aaKnown RBP15.68■□□□□ 0.1
SHH-201ENST00000297261 TMA7Q9Y2S6 64 aaKnown RBP15.68■□□□□ 0.1
SHH-201ENST00000297261 PTGES3LE9PB15 166 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 CDH8P55286 799 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 FCGRTP55899 365 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 CNPY1Q3B7I2 92 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 SATL1Q86VE3 508 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 APPL2Q8NEU8 664 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 RAET1EQ8TD07 263 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 KREMEN1Q96MU8 473 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 ACO2Q99798 780 aaKnown RBP15.68■□□□□ 0.1
SHH-201ENST00000297261 RSL24D1Q9UHA3 163 aaKnown RBP15.68■□□□□ 0.1
SHH-201ENST00000297261 TMEM59LQ9UK28 342 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 POLIQ9UNA4 740 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 TAF1LQ8IZX4 1826 aa15.68■□□□□ 0.1
SHH-201ENST00000297261 LACTBL1A8MY62 500 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 PHGDHO43175 533 aaKnown RBP15.67■□□□□ 0.1
SHH-201ENST00000297261 MAP3K13O43283 966 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 BNIP3LO60238 219 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 FKBP9O95302 570 aa15.67■□□□□ 0.1
SHH-201ENST00000297261 TPH1P17752 444 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms