RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CMTM6Q9NX76 183 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 USP18Q9UMW8 372 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 ROBO1Q9Y6N7 1651 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 STAU1O95793 577 aaKnown RBP10.06□□□□□ -0.8
COL6A3-201ENST00000295550 GPC1P35052 558 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 RHAGQ02094 409 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 SCARA3Q6AZY7 606 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 OTOP1Q7RTM1 612 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 NACC2Q96BF6 587 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 OSBPL6Q9BZF3 934 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 SEMA6AQ9H2E6 1030 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 MYOZ2Q9NPC6 264 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 NMRK2Q9NPI5 230 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 SUPT20HL2P0C7V6 817 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 PGM5Q15124 567 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 STOML2Q9UJZ1 356 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 ING4Q9UNL4 249 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 SNX9Q9Y5X1 595 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 C4AP0C0L4 1744 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 C4BP0C0L5 1744 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 ALDH1A1P00352 501 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 BLOC1S5Q8TDH9 187 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 TAAR1Q96RJ0 339 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 RRN3Q9NYV6 651 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 COQ6Q9Y2Z9 468 aa10.06□□□□□ -0.8
COL6A3-201ENST00000295550 PKD1L3Q7Z443 1732 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 LRP6O75581 1613 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 H3BN98 237 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 RRP1BQ14684 758 aaKnown RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CBWD6Q4V339 395 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 PYDC2Q56P42 97 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CBWD3Q5JTY5 395 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CBWD5Q5RIA9 395 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ZNF512Q96ME7 567 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 LSM7Q9UK45 103 aaKnown RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 IFI35P80217 286 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 TSPAN14Q8NG11 270 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ART4Q93070 314 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SLITRK2Q9H156 845 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CCDC59Q9P031 241 aaKnown RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 PPP2R3BQ9Y5P8 575 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 EVPLQ92817 2033 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 FAM47E-STBD1D6RA91 191 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 OGTO15294 1046 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SLC1A6P48664 564 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CAMK2GQ13555 558 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 HYIQ5T013 277 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 IRGCQ6NXR0 463 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 TMEM121Q9BTD3 319 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 TMEM138Q9NPI0 162 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ABCB10Q9NRK6 738 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 KIAA1257Q9ULG3 409 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CBFA2T3O75081 653 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 KHDRBS3O75525 346 aaKnown RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SEC24AO95486 1093 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 MYCP01106 439 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ANXA6P08133 673 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ABHD2P08910 425 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 TTLL9Q3SXZ7 439 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ZNF614Q8N883 585 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ACSF2Q96CM8 615 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 NUAK2Q9H093 628 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 EURLQ9NYK6 297 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 STX11O75558 287 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SNX17Q15036 470 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 LIN54Q6MZP7 749 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 C1orf186Q6ZWK4 172 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ZNF605Q86T29 641 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 THAP1Q9NVV9 213 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SPACA6W5XKT8 324 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ANXA9O76027 345 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SUPT7LO94864 414 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 RARAP10276 462 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SV2CQ496J9 727 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SLC38A7Q9NVC3 462 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 NCKIPSDQ9NZQ3 722 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 C2orf81A6NN90 581 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CYP2C8P10632 490 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 KBTBD2Q8IY47 623 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ACER1Q8TDN7 264 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 STK32AQ8WU08 396 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 FAM120BQ96EK7 910 aaKnown RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 MAPRE3Q9UPY8 281 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CDC40O60508 579 aaKnown RBP eCLIP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ZNF37AP17032 561 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 PNPLA4P41247 253 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 AP1S2P56377 157 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 QPRTQ15274 297 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 PSMA8Q8TAA3 256 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 CYP2W1Q8TAV3 490 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 PLEKHG4BQ96PX9 1271 aa10.05□□□□□ -0.8
COL6A3-201ENST00000295550 ATF5Q9Y2D1 282 aaPredicted RBP10.05□□□□□ -0.8
COL6A3-201ENST00000295550 SHROOM3Q8TF72 1996 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 NPR3P17342 541 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 S100A1P23297 94 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 MPZL3Q6UWV2 235 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 CRELD2Q6UXH1 353 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-201ENST00000295550 PYDC1Q8WXC3 89 aa10.04□□□□□ -0.8
COL6A3-201ENST00000295550 ATG4CQ96DT6 458 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms