RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 TAF2Q6P1X5 1199 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 VCPIP1Q96JH7 1222 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 CDRT15Q96T59 188 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 ELOVL4Q9GZR5 314 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 SEMA6AQ9H2E6 1030 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 COMMD8Q9NX08 183 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 UBA2Q9UBT2 640 aaPredicted RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 CCDC154A6NI56 674 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 MRASO14807 208 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 PEX1O43933 1283 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 CNOT3O75175 753 aaKnown RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 ADRB2P07550 413 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 GJB1P08034 283 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 TYMPP19971 482 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 KDELR1P24390 212 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 FASP25445 335 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 NCF4Q15080 339 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 CCDC153Q494R4 210 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 MARK2Q7KZI7 788 aaKnown RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 ETNPPLQ8TBG4 499 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 VPS33AQ96AX1 596 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 CPNE1Q99829 537 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 GANQ9H2C0 597 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 OR12D3Q9UGF7 316 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 PPRC1Q5VV67 1664 aaKnown RBP11.68□□□□□ -0.54
USP53-201ENST00000274030 SNTNA6NMZ2 147 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 BANF1O75531 89 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 ATP6V1G2O95670 118 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 PGK1P00558 417 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 PAEPP09466 180 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 MMP13P45452 471 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 NPY2RP49146 381 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 SPANXN3Q5MJ09 141 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 C1orf186Q6ZWK4 172 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 ZDHHC17Q8IUH5 632 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 FAM9CQ8IZT9 166 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 GRIN3AQ8TCU5 1115 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 EPS8L1Q8TE68 723 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 DEPDC7Q96QD5 511 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 NMRAL1Q9HBL8 299 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 MARCH2Q9P0N8 246 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 NDOR1Q9UHB4 597 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 ZNF112Q9UJU3 913 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 TRIM17Q9Y577 477 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 N6AMT1Q9Y5N5 214 aa11.68□□□□□ -0.54
USP53-201ENST00000274030 PSMD12O00232 456 aaPredicted RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 TRDMT1O14717 391 aaKnown RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 PTPRAP18433 802 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 NOS3P29474 1203 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 RPA3P35244 121 aaPredicted RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 NR2C2P49116 596 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 RAD23AP54725 363 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 ZNF621Q6ZSS3 439 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 DET1Q7L5Y6 550 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 STK32CQ86UX6 486 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 DHFR2Q86XF0 187 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 RNPEPQ9H4A4 650 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 FAM198AQ9UFP1 575 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 TRHDEQ9UKU6 1024 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PTGES3LE9PB15 166 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 APOC4-APOC2K7ER74 178 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 SASH3O75995 380 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 ATG7O95352 703 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 IFNA14P01570 189 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 APOC2P02655 101 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 EIF4BP23588 611 aaKnown RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 SOX6P35712 828 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 TNFSF9P41273 254 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 DDR1Q08345 913 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 FAM98BQ52LJ0 330 aaKnown RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 KHDRBS2Q5VWX1 349 aaKnown RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 MTMR9Q96QG7 549 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 HGH1Q9BTY7 390 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 RNF208Q9H0X6 261 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 KRCC1Q9NPI7 259 aaPredicted RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 PXDNQ92626 1479 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 EPHB6O15197 1021 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PROCP04070 461 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PTPN1P18031 435 aaKnown RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 EVX2Q03828 476 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 TBX2Q13207 712 aaPredicted RBP11.67□□□□□ -0.54
USP53-201ENST00000274030 FGD3Q5JSP0 725 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 DGKKQ5KSL6 1271 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 RAP1GAP2Q684P5 730 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 IL27RAQ6UWB1 636 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 TMPRSS6Q8IU80 811 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 MCOLN3Q8TDD5 553 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 IDI2Q9BXS1 227 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 MYLK2Q9H1R3 596 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PORCNQ9H237 461 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 ZDHHC6Q9H6R6 413 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PACSIN3Q9UKS6 424 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 KLHL20Q9Y2M5 609 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 TRPV2Q9Y5S1 764 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 HS6ST1O60243 411 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PIGNO95427 931 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 KRT75O95678 551 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 GLRA2P23416 452 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 CRABP2P29373 138 aa11.67□□□□□ -0.54
USP53-201ENST00000274030 PPP2R1BP30154 601 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms