RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 C1orf146Q5VVC0 180 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 ARHGAP17Q68EM7 881 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 IPMKQ8NFU5 416 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 MAGEC3Q8TD91 643 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 PTCD3Q96EY7 689 aaKnown RBP17.04■□□□□ 0.32
VPS54-201ENST00000272322 SMOQ99835 787 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 OMDQ99983 421 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 WDCPQ9H6R7 721 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 OR12D3Q9UGF7 316 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 ST3GAL5Q9UNP4 418 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 PMPCBO75439 489 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 ZFXP17010 805 aaPredicted RBP17.04■□□□□ 0.32
VPS54-201ENST00000272322 PARP6Q2NL67 630 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 NOMO2Q5JPE7 1267 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 ZNF280DQ6N043 979 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 GSTCDQ8NEC7 633 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 UCMAQ8WVF2 138 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 SCYL1Q96KG9 808 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 EMCNQ9ULC0 261 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 SMAPO00193 183 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 CCL22O00626 93 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 TRDMT1O14717 391 aaKnown RBP17.04■□□□□ 0.32
VPS54-201ENST00000272322 SETSIPP0DME0 302 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 NOS2P35228 1153 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 SEMA5AQ13591 1074 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 PDK1Q15118 436 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 CFAP157Q5JU67 520 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 IQSEC1Q6DN90 963 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 CHSY1Q86X52 802 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 SSU72Q9NP77 194 aaKnown RBP17.04■□□□□ 0.32
VPS54-201ENST00000272322 VANGL2Q9ULK5 521 aa17.04■□□□□ 0.32
VPS54-201ENST00000272322 DCXO43602 365 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 POLBP06746 335 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 PGFP49763 221 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 OCRLQ01968 901 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 CTBP1Q13363 440 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 TCHHL1Q5QJ38 904 aaPredicted RBP17.03■□□□□ 0.32
VPS54-201ENST00000272322 SCN4BQ8IWT1 228 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 PYDC1Q8WXC3 89 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 YIPF3Q9GZM5 350 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 WDR55Q9H6Y2 383 aaPredicted RBP17.03■□□□□ 0.32
VPS54-201ENST00000272322 FETUBQ9UGM5 382 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 XPO1O14980 1071 aaKnown RBP17.03■□□□□ 0.32
VPS54-201ENST00000272322 NR2C2P49116 596 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 SEPT6Q14141 434 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 NXNQ6DKJ4 435 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 ALKAL1Q6UXT8 129 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 WDR75Q8IWA0 830 aaKnown RBP17.03■□□□□ 0.32
VPS54-201ENST00000272322 TTC39CQ8N584 583 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 NRG4Q8WWG1 115 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 CERS2Q96G23 380 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 MOCS1Q9NZB8 636 aa17.03■□□□□ 0.32
VPS54-201ENST00000272322 SPECC1L-ADORA2AF8WAN1 911 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 F2P00734 622 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 LTFP02788 710 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 PTPN3P26045 913 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 CXCR3P49682 368 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 GRB14Q14449 540 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 NT5DC4Q86YG4 428 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 MCUQ8NE86 351 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 CENPIQ92674 756 aaPredicted RBP17.02■□□□□ 0.32
VPS54-201ENST00000272322 RTP4Q96DX8 246 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 HSFY1Q96LI6 401 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 FERMT1Q9BQL6 677 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 WWP1Q9H0M0 922 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 SNX15Q9NRS6 342 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 NMRK1Q9NWW6 199 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 BFARQ9NZS9 450 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 CDY2AQ9Y6F7 541 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 C17orf102A2RUQ5 167 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 LRIG2O94898 1065 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 MT-CO1P00395 513 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 NMBRP28336 390 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 ACADSBP45954 432 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 TAF1CQ15572 869 aaPredicted RBP17.02■□□□□ 0.32
VPS54-201ENST00000272322 RPS27LQ71UM5 84 aaKnown RBP17.02■□□□□ 0.32
VPS54-201ENST00000272322 ZMIZ2Q8NF64 920 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 MPP6Q9NZW5 540 aa17.02■□□□□ 0.32
VPS54-201ENST00000272322 APOBEC2Q9Y235 224 aaKnown RBP17.02■□□□□ 0.32
VPS54-201ENST00000272322 TK2O00142 265 aa17.02■□□□□ 0.31
VPS54-201ENST00000272322 PROCP04070 461 aa17.02■□□□□ 0.31
VPS54-201ENST00000272322 CHRNGP07510 517 aa17.02■□□□□ 0.31
VPS54-201ENST00000272322 SERPINB5P36952 375 aa17.02■□□□□ 0.31
VPS54-201ENST00000272322 FSTL4Q6MZW2 842 aa17.02■□□□□ 0.31
VPS54-201ENST00000272322 SNX31Q8N9S9 440 aa17.02■□□□□ 0.31
VPS54-201ENST00000272322 SCG3Q8WXD2 468 aaKnown RBP17.02■□□□□ 0.31
VPS54-201ENST00000272322 DNAJC9Q8WXX5 260 aa17.02■□□□□ 0.31
VPS54-201ENST00000272322 USP3Q9Y6I4 520 aa17.02■□□□□ 0.31
VPS54-201ENST00000272322 PPP1R12AO14974 1030 aaPredicted RBP17.01■□□□□ 0.31
VPS54-201ENST00000272322 PLIN3O60664 434 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 RALBP11234 206 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 CRHR1P34998 444 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 ITKQ08881 620 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 STRADAQ7RTN6 431 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 FAM35AQ86V20 835 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 PHTF2Q8N3S3 785 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 MIEF2Q96C03 454 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 NPY6RQ99463 290 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 C11orf84Q9BUA3 381 aaPredicted RBP17.01■□□□□ 0.31
VPS54-201ENST00000272322 FTHL17Q9BXU8 183 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms