RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 TRIM10Q9UDY6 481 aa13.14□□□□□ -0.31
SS18-202ENST00000269138 GGA2Q9UJY4 613 aa13.14□□□□□ -0.31
SS18-202ENST00000269138 INTS6Q9UL03 887 aaKnown RBP13.14□□□□□ -0.31
SS18-202ENST00000269138 ADGRG1Q9Y653 693 aa13.14□□□□□ -0.31
SS18-202ENST00000269138 MIA3Q5JRA6 1907 aa13.14□□□□□ -0.31
SS18-202ENST00000269138 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 A0A0A6YYK5 440 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 PJA2O43164 708 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ARHGAP6O43182 974 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 BUB1O43683 1085 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 BUB1BO60566 1050 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 CLDN11O75508 207 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 RARAP10276 462 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 MZF1P28698 734 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 HOXC13P31276 330 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 TIE1P35590 1138 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 GJC1P36383 396 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ARHGAP25P42331 645 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 KIR2DL1P43626 348 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 CDH4P55283 916 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 MTAPQ13126 283 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ZNF177Q13360 481 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 FUT11Q495W5 492 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 BOLA3Q53S33 107 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ACBD5Q5T8D3 534 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 CHST9Q7L1S5 443 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ANKS1BQ7Z6G8 1248 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ADIPOR2Q86V24 386 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 APCDD1Q8J025 514 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 CCDC33Q8N5R6 958 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 USP33Q8TEY7 942 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 HSPH1Q92598 858 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 TBC1D31Q96DN5 1066 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ZNF830Q96NB3 372 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 ACOX2Q99424 681 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ZYG11BQ9C0D3 744 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 PPARGC1AQ9UBK2 798 aaKnown RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 MAN1A1P33908 653 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 CSKP41240 450 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 HADHBP55084 474 aaKnown RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 FBXO43Q4G163 708 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 PREPLQ4J6C6 727 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 PPP6R3Q5H9R7 873 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 EGFLAMQ63HQ2 1017 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 NLRP14Q86W24 1093 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 CCDC117Q8IWD4 279 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 SYNPOQ8N3V7 929 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 DTWD2Q8NBA8 298 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 RPLP0P6Q8NHW5 317 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 TPCN2Q8NHX9 752 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 CYB5D2Q8WUJ1 264 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 CIPCQ9C0C6 399 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 NDFIP2Q9NV92 336 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 ELOVL2Q9NXB9 296 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 KIAA1522Q9P206 1035 aaPredicted RBP13.13□□□□□ -0.31
SS18-202ENST00000269138 TBC1D30Q9Y2I9 924 aa13.13□□□□□ -0.31
SS18-202ENST00000269138 KIAA1549LQ6ZVL6 1849 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 BTNL10A8MVZ5 291 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 KLF8O95600 359 aaPredicted RBP13.12□□□□□ -0.31
SS18-202ENST00000269138 PTMAP06454 111 aaKnown RBP13.12□□□□□ -0.31
SS18-202ENST00000269138 RHOQP17081 205 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 GOT1P17174 413 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 COMTP21964 271 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 EPHB2P29323 1055 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 WASP42768 502 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 HADHQ16836 314 aaKnown RBP13.12□□□□□ -0.31
SS18-202ENST00000269138 PITRM1Q5JRX3 1037 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 RNF219Q5W0B1 726 aaPredicted RBP13.12□□□□□ -0.31
SS18-202ENST00000269138 MBLAC2Q68D91 279 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 NUDT18Q6ZVK8 323 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 PSTKQ8IV42 348 aaKnown RBP13.12□□□□□ -0.31
SS18-202ENST00000269138 ALLCQ8N6M5 410 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 IL17RCQ8NAC3 791 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 WFIKKN2Q8TEU8 576 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 TEKT4Q8WW24 435 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 ALG14Q96F25 216 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 EPAS1Q99814 870 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 KCNF1Q9H3M0 494 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.12□□□□□ -0.31
SS18-202ENST00000269138 KLHL11Q9NVR0 708 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 SPATA6Q9NWH7 488 aaPredicted RBP13.12□□□□□ -0.31
SS18-202ENST00000269138 CWC15Q9P013 229 aaKnown RBP13.12□□□□□ -0.31
SS18-202ENST00000269138 LCMT1Q9UIC8 334 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 STARD13Q9Y3M8 1113 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 OR51B4Q9Y5P0 310 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 ALG6Q9Y672 507 aa13.12□□□□□ -0.31
SS18-202ENST00000269138 ATG2BQ96BY7 2078 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 A0A0D9SEW6 157 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 WASH3PC4AMC7 463 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 EEF2KO00418 725 aaKnown RBP13.11□□□□□ -0.31
SS18-202ENST00000269138 RHOCP08134 193 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 CD48P09326 243 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 TNNT1P13805 278 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 OR1E1P30953 314 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 CTSOP43234 321 aaPredicted RBP13.11□□□□□ -0.31
SS18-202ENST00000269138 ARSEP51690 589 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 NAP1L1P55209 391 aaKnown RBP13.11□□□□□ -0.31
SS18-202ENST00000269138 TPI1P60174 286 aa13.11□□□□□ -0.31
SS18-202ENST00000269138 MRPS21P82921 87 aaKnown RBP13.11□□□□□ -0.31
SS18-202ENST00000269138 KIF5AQ12840 1032 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms