RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 MFSD3Q96ES6 412 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 CERS2Q96G23 380 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 SPATA13Q96N96 652 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 PHF12Q96QT6 1004 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 GCOM2Q9BZD3 368 aaPredicted RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 PRDM12Q9H4Q4 367 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 CYP3A43Q9HB55 503 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 DMAP1Q9NPF5 467 aaPredicted RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 TCF7L2Q9NQB0 619 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 MOCS1Q9NZB8 636 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 TUBGCP4Q9UGJ1 667 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 NUP205Q92621 2012 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 SF3B1O75533 1304 aaKnown RBP eCLIP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 MCM3APO60318 1980 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 TK2O00142 265 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 GCATO75600 419 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 TPSB2P20231 275 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 FGFR3P22607 806 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 PROZP22891 400 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 DYNC1I2Q13409 638 aaKnown RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 TPSAB1Q15661 275 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 FSCBQ5H9T9 825 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 ARHGAP22Q7Z5H3 698 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 USP33Q8TEY7 942 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 RCN3Q96D15 328 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 DCUN1D1Q96GG9 259 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 PRPF18Q99633 342 aaKnown RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 SPATC1LQ9H0A9 340 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 C1orf21Q9H246 121 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 DNAJC5Q9H3Z4 198 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 DDX43Q9NXZ2 648 aaKnown RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 SNTG2Q9NY99 539 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 PGAM1P18669 254 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 HMGB2P26583 209 aaKnown RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 AAGABQ6PD74 315 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 RBM44Q6ZP01 1051 aaKnown RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 ARHGAP18Q8N392 663 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 ACVR1CQ8NER5 493 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 NAT14Q8WUY8 206 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 FCRL3Q96P31 734 aaPredicted RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 QKIQ96PU8 341 aaKnown RBP eCLIP12.69□□□□□ -0.382e-7■■■■□ 25.7
CHMP3-201ENST00000263856 KCNK16Q96T55 309 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 FERMT1Q9BQL6 677 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 SEMA6AQ9H2E6 1030 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 IARS2Q9NSE4 1012 aaKnown RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 C20orf96Q9NUD7 363 aaPredicted RBP12.69□□□□□ -0.38
CHMP3-201ENST00000263856 ITGA11Q9UKX5 1188 aa12.69□□□□□ -0.38
CHMP3-201ENST00000263856 GABBR2O75899 941 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 PYGLP06737 847 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 GP5P40197 560 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 CHN2P52757 468 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 KIZQ2M2Z5 673 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 C6orf52Q5T4I8 152 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 DEFB106AQ8N104 65 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 ACTRT2Q8TDY3 377 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 ZFAND2BQ8WV99 257 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 OTUD5Q96G74 571 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 ADA2Q9NZK5 511 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 CCNT2O60583 730 aaKnown RBP12.68□□□□□ -0.38
CHMP3-201ENST00000263856 MT-CO1P00395 513 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 XRCC1P18887 633 aaPredicted RBP12.68□□□□□ -0.38
CHMP3-201ENST00000263856 GRK2P25098 689 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 LMO2P25791 158 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 ART3Q13508 389 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 SEMA5AQ13591 1074 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 ZNF460Q14592 562 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 NRF1Q16656 503 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 SLC5A9Q2M3M2 681 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 ANKRD20A4Q4UJ75 823 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 CERCAMQ5T4B2 595 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 ZNF618Q5T7W0 954 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 BHLHE22Q8NFJ8 381 aaPredicted RBP12.68□□□□□ -0.38
CHMP3-201ENST00000263856 RAB3IL1Q8TBN0 382 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 TRPM4Q8TD43 1214 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 SREK1Q8WXA9 508 aaKnown RBP12.68□□□□□ -0.38
CHMP3-201ENST00000263856 EZH1Q92800 747 aaPredicted RBP12.68□□□□□ -0.38
CHMP3-201ENST00000263856 KHSRPQ92945 711 aaKnown RBP eCLIP12.68□□□□□ -0.385e-6■■■■□ 19.6
CHMP3-201ENST00000263856 RTP4Q96DX8 246 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 HIC2Q96JB3 615 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 TSNARE1Q96NA8 513 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 ADAMTS5Q9UNA0 930 aa12.68□□□□□ -0.38
CHMP3-201ENST00000263856 MDM4O15151 490 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 CLPTM1O96005 669 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 AKAP5P24588 427 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 ACAT1P24752 427 aaKnown RBP12.67□□□□□ -0.38
CHMP3-201ENST00000263856 CNTFP26441 200 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 ATICP31939 592 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 THOP1P52888 689 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 TNFAIP2Q03169 654 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 MAP7Q14244 749 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 TLR1Q15399 786 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 CELF3Q5SZQ8 465 aaKnown RBP12.67□□□□□ -0.38
CHMP3-201ENST00000263856 FSTL4Q6MZW2 842 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 CTU1Q7Z7A3 348 aaKnown RBP12.67□□□□□ -0.38
CHMP3-201ENST00000263856 ZNF567Q8N184 647 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 SLC2A14Q8TDB8 520 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 ARNTL2Q8WYA1 636 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 JADE3Q92613 823 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 OMDQ99983 421 aa12.67□□□□□ -0.38
CHMP3-201ENST00000263856 CDH19Q9H159 772 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms