RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PCLAFQ15004 111 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 C11orf91Q3C1V1 193 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 TEX44Q53QW1 395 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 MBLAC2Q68D91 279 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 ATG14Q6ZNE5 492 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 PDSS2Q86YH6 399 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 KCNK16Q96T55 309 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 APBA2Q99767 749 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 PRDM12Q9H4Q4 367 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 COPG2Q9UBF2 871 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 PCDHGC3Q9UN70 934 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 FNDC3AQ9Y2H6 1198 aaKnown RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 MAFBQ9Y5Q3 323 aaPredicted RBP12.26□□□□□ -0.45
USHBP1-201ENST00000252597 SNX10Q9Y5X0 201 aa12.26□□□□□ -0.45
USHBP1-201ENST00000252597 ABLIM1O14639 778 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 CILPO75339 1184 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 POLBP06746 335 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 ZNF286BP0CG31 522 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 HNRNPLP14866 589 aaKnown RBP eCLIP12.25□□□□□ -0.45
USHBP1-201ENST00000252597 PTPRAP18433 802 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 IL4RP24394 825 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 AP3M2P53677 418 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 HDAC4P56524 1084 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 GSTA3Q16772 222 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 NADK2Q4G0N4 442 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 MAVSQ7Z434 540 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 FAM83AQ86UY5 434 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 ARHGAP18Q8N392 663 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 NIPA2Q8N8Q9 360 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 ACVR1CQ8NER5 493 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 CCT7Q99832 543 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 PCDHA11Q9Y5I1 949 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 CITO14578 2027 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 MAGEB3O15480 346 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 MFSD11O43934 449 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 PLA2G6O60733 806 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 GPC4O75487 556 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 FAM200BP0CF97 657 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 PRPSAP1Q14558 356 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 SURF1Q15526 300 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 HABP4Q5JVS0 413 aaKnown RBP12.25□□□□□ -0.45
USHBP1-201ENST00000252597 RWDD4Q6NW29 188 aaKnown RBP12.25□□□□□ -0.45
USHBP1-201ENST00000252597 NAPRTQ6XQN6 538 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 ACAD11Q709F0 780 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 LCA5Q86VQ0 697 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 FBXW8Q8N3Y1 598 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 C18orf25Q96B23 403 aaPredicted RBP12.25□□□□□ -0.45
USHBP1-201ENST00000252597 P2RY11Q96G91 374 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 TBCBQ99426 244 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 Q9H521 79 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 SUDS3Q9H7L9 328 aaPredicted RBP12.25□□□□□ -0.45
USHBP1-201ENST00000252597 GOLGA2P5Q9HBQ8 144 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 DTLQ9NZJ0 730 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 CCDC167Q9P0B6 97 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 TDRKHQ9Y2W6 561 aaKnown RBP12.25□□□□□ -0.45
USHBP1-201ENST00000252597 ADGRA2Q96PE1 1338 aa12.25□□□□□ -0.45
USHBP1-201ENST00000252597 GREB1LQ9C091 1923 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-201ENST00000252597 M0QYT0 321 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 CLDN5O00501 218 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 DNAJA2O60884 412 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 FDFT1P37268 417 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 GABRB2P47870 512 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 CDH15P55291 814 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 MXD4Q14582 209 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-201ENST00000252597 ANKRD20A4Q4UJ75 823 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 BNC2Q6ZN30 1099 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-201ENST00000252597 TTC30AQ86WT1 665 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 MYO1HQ8N1T3 1032 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 PQLC1Q8N2U9 271 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 FAM81AQ8TBF8 368 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 OTUD5Q96G74 571 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 CSPG4P5Q96PW8 444 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 FAM192AQ9GZU8 254 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 PIF1Q9H611 641 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 PLAC1Q9HBJ0 212 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 CHST12Q9NRB3 414 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 CHRAC1Q9NRG0 131 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 BFARQ9NZS9 450 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 GNEQ9Y223 722 aaKnown RBP12.24□□□□□ -0.45
USHBP1-201ENST00000252597 RUVBL2Q9Y230 463 aaKnown RBP12.24□□□□□ -0.45
USHBP1-201ENST00000252597 ZNF646O15015 1829 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-201ENST00000252597 NEMP2A6NFY4 417 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 ACKR2O00590 384 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 TRDMT1O14717 391 aaKnown RBP12.24□□□□□ -0.45
USHBP1-201ENST00000252597 MAFO75444 373 aaPredicted RBP12.24□□□□□ -0.45
USHBP1-201ENST00000252597 CRABP2P29373 138 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 CPOXP36551 454 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 POU6F1Q14863 301 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 DGKDQ16760 1214 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 KCTD21Q4G0X4 260 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 TMEM259Q4ZIN3 620 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 TREML2Q5T2D2 321 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 LRRC8EQ6NSJ5 796 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 SH2D5Q6ZV89 423 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 DEFB106AQ8N104 65 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 KCTD4Q8WVF5 259 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 PRM3Q9NNZ6 103 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 SNTG2Q9NY99 539 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 HOXC10Q9NYD6 342 aa12.24□□□□□ -0.45
USHBP1-201ENST00000252597 DCDC2Q9UHG0 476 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms