RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ASB3Q9Y575 518 aa19.18■□□□□ 0.66
CPSF3-201ENST00000238112 MYO18AQ92614 2054 aaKnown RBP19.17■□□□□ 0.66
CPSF3-201ENST00000238112 KCNK1O00180 336 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 CCNT2O60583 730 aaKnown RBP19.17■□□□□ 0.66
CPSF3-201ENST00000238112 TAF6P49848 677 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 EPHB1P54762 984 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 VWA5B1Q5TIE3 1220 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 ATG14Q6ZNE5 492 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 STRA8Q7Z7C7 330 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF483Q8TF39 744 aaPredicted RBP19.17■□□□□ 0.66
CPSF3-201ENST00000238112 AGAP3Q96P47 875 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 RBBP8Q99708 897 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 SHCBP1LQ9BZQ2 653 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF358Q9NW07 568 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 KLK14Q9P0G3 267 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 CDY2AQ9Y6F7 541 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 CDY1Q9Y6F8 540 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 RALGAPA2Q2PPJ7 1873 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 XPOTO43592 962 aaKnown RBP19.17■□□□□ 0.66
CPSF3-201ENST00000238112 HUS1O60921 280 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 ARRB2P32121 409 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 GMPRP36959 345 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 RNF220Q5VTB9 566 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 OTUD1Q5VV17 481 aaPredicted RBP19.17■□□□□ 0.66
CPSF3-201ENST00000238112 DNAAF3Q8N9W5 541 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.17■□□□□ 0.66
CPSF3-201ENST00000238112 B3GALNT2Q8NCR0 500 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 SREK1Q8WXA9 508 aaKnown RBP19.17■□□□□ 0.66
CPSF3-201ENST00000238112 FCRL3Q96P31 734 aaPredicted RBP19.17■□□□□ 0.66
CPSF3-201ENST00000238112 CYP4F11Q9HBI6 524 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 LRRC4Q9HBW1 653 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 BFARQ9NZS9 450 aa19.17■□□□□ 0.66
CPSF3-201ENST00000238112 SMIM28A0A1B0GU29 152 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 HSPA4LO95757 839 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 FESP07332 822 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 MMP3P08254 477 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 UBTFL6P0CB48 400 aaPredicted RBP19.16■□□□□ 0.66
CPSF3-201ENST00000238112 CCNA1P78396 465 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 CDC42EP1Q00587 391 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 CDC16Q13042 620 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 OLIG2Q13516 323 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 DPYSQ14117 519 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 SV2CQ496J9 727 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 FSCBQ5H9T9 825 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 PDZD4Q76G19 769 aaPredicted RBP19.16■□□□□ 0.66
CPSF3-201ENST00000238112 ADGRG6Q86SQ4 1221 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 TNS4Q8IZW8 715 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 GPRC5AQ8NFJ5 357 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 ACTRT2Q8TDY3 377 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 PYDC1Q8WXC3 89 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 NPY6RQ99463 290 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 DUSP16Q9BY84 665 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 CDHR5Q9HBB8 845 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 PDP2Q9P2J9 529 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 VANGL2Q9ULK5 521 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 PCDHB12Q9Y5F1 795 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF195O14628 629 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 AHCYL1O43865 530 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 USP12O75317 370 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 GPR32O75388 356 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 ZNF189O75820 626 aaPredicted RBP19.16■□□□□ 0.66
CPSF3-201ENST00000238112 PDE5AO76074 875 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 LIMK2P53671 638 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 DGKDQ16760 1214 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 SIX6OS1Q8N1H7 587 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 SHKBP1Q8TBC3 707 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 SLC26A7Q8TE54 656 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 JADE3Q92613 823 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 NT5C3BQ969T7 300 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 PGLYRP2Q96PD5 576 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 CDH22Q9UJ99 828 aa19.16■□□□□ 0.66
CPSF3-201ENST00000238112 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.15■□□□□ 0.66
CPSF3-201ENST00000238112 RRN3P2A6NIE6 340 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 DCLK1O15075 740 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 ADCY6O43306 1168 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 AP2A1O95782 977 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 MAGEA12P43365 314 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 FSTL4Q6MZW2 842 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 DHDDSQ86SQ9 333 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 TP53INP2Q8IXH6 220 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 OR6J1Q8NGC5 347 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 WNT8BQ93098 351 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 ISL2Q96A47 359 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 CCDC124Q96CT7 223 aaKnown RBP19.15■□□□□ 0.66
CPSF3-201ENST00000238112 HNRNPABQ99729 332 aaKnown RBP19.15■□□□□ 0.66
CPSF3-201ENST00000238112 GOLGA2P5Q9HBQ8 144 aa19.15■□□□□ 0.66
CPSF3-201ENST00000238112 LOC100653049A0A140TA62 436 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 MAP3K13O43283 966 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 CAPN15O75808 1086 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 KRT34O76011 436 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 MPOP05164 745 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 NPR3P17342 541 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 PTPN3P26045 913 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 GTF2A2P52657 109 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 ASPHQ12797 758 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 CUL3Q13618 768 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 RAPH1Q70E73 1250 aa19.14■□□□□ 0.66
CPSF3-201ENST00000238112 PLD6Q8N2A8 252 aaKnown RBP19.14■□□□□ 0.66
CPSF3-201ENST00000238112 SPDYE1Q8NFV5 336 aaPredicted RBP19.14■□□□□ 0.66
CPSF3-201ENST00000238112 CDCA5Q96FF9 252 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms