RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 RFC4P35249 363 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 ATXN3P54252 364 aaPredicted RBP13.31□□□□□ -0.28
MSH2-201ENST00000233146 RACK1P63244 317 aaKnown RBP13.31□□□□□ -0.28
MSH2-201ENST00000233146 ANGEL2Q5VTE6 544 aaKnown RBP13.31□□□□□ -0.28
MSH2-201ENST00000233146 NEK5Q6P3R8 708 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 DEPDC4Q8N2C3 294 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 MFSD4AQ8N468 514 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 SNX31Q8N9S9 440 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 SIMC1Q8NDZ2 872 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 REEP2Q9BRK0 252 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 SMOXQ9NWM0 555 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 GMIPQ9P107 970 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 UGT2A1Q9Y4X1 527 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 hCG_2039718K7EN88 272 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 GPR25O00155 361 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 GARTP22102 1010 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 NUDT1P36639 197 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 B2MP61769 119 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 PPIL6Q8IXY8 311 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 NAT8LQ8N9F0 302 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 ZSWIM2Q8NEG5 633 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 UHRF1Q96T88 793 aaPredicted RBP13.3□□□□□ -0.28
MSH2-201ENST00000233146 POLE4Q9NR33 117 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 PKD2L1Q9P0L9 805 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 ZNFX1Q9P2E3 1918 aaKnown RBP13.3□□□□□ -0.28
MSH2-201ENST00000233146 LRRIQ4A6NIV6 560 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 SNAP23O00161 211 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 DLGAP1O14490 977 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 PSTPIP1O43586 416 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 CD1EP15812 388 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 JUNBP17275 347 aaPredicted RBP13.3□□□□□ -0.28
MSH2-201ENST00000233146 POU6F1Q14863 301 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 CDK10Q15131 360 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 DUSP7Q16829 419 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 SNAP47Q5SQN1 464 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 UNC5AQ6ZN44 842 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 ZBTB49Q6ZSB9 765 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 TPH2Q8IWU9 490 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 MFSD2AQ8NA29 543 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 CPT1BQ92523 772 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 MRPL9Q9BYD2 267 aaKnown RBP13.3□□□□□ -0.28
MSH2-201ENST00000233146 TRPV6Q9H1D0 765 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 IKZF4Q9H2S9 585 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 ZNF229Q9UJW7 825 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 UBR2Q8IWV8 1755 aa13.3□□□□□ -0.28
MSH2-201ENST00000233146 EVPLLA8MZ36 301 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 ERVH48-1M5A8F1 160 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 TOM1L1O75674 476 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 ALDH1A2O94788 518 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 SNRPAP09012 282 aaKnown RBP13.29□□□□□ -0.28
MSH2-201ENST00000233146 WEE2P0C1S8 567 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 PTPN9P43378 593 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 SLC1A6P48664 564 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 ZNF132P52740 706 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 NME5P56597 212 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 VWA5B1Q5TIE3 1220 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 MBLAC2Q68D91 279 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 SLC9A4Q6AI14 798 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 ACAD10Q6JQN1 1059 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 POLNQ7Z5Q5 900 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 SLC26A11Q86WA9 606 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 FAM71AQ8IYT1 594 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 RNF148Q8N7C7 305 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 ZFP90Q8TF47 636 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 SNX19Q92543 992 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 TRIM63Q969Q1 353 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 ZNF717Q9BY31 904 aaPredicted RBP13.29□□□□□ -0.28
MSH2-201ENST00000233146 PNPOQ9NVS9 261 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 KCNJ13O60928 360 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 ZBTB7AO95365 584 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 GSRP00390 522 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 YBX3P16989 372 aaKnown RBP eCLIP13.29□□□□□ -0.281e-6■□□□□ 10.8
MSH2-201ENST00000233146 HADHAP40939 763 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 DPP6P42658 865 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 QARSP47897 775 aaKnown RBP13.29□□□□□ -0.28
MSH2-201ENST00000233146 TAGLNQ01995 201 aaKnown RBP13.29□□□□□ -0.28
MSH2-201ENST00000233146 BBS9Q3SYG4 887 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 GTF2IRD2BQ6EKJ0 949 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 HMBOX1Q6NT76 420 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 FKBP9P1Q75LS8 142 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 PIWIL3Q7Z3Z3 882 aaKnown RBP13.29□□□□□ -0.28
MSH2-201ENST00000233146 GTF2IRD2Q86UP8 949 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 SLC47A2Q86VL8 602 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 IGDCC3Q8IVU1 814 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 RHOT1Q8IXI2 618 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 GALNT6Q8NCL4 622 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 KCNH5Q8NCM2 988 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 CMASQ8NFW8 434 aaPredicted RBP13.29□□□□□ -0.28
MSH2-201ENST00000233146 MROH5Q6ZUA9 1318 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 SOCS2O14508 198 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 SEC24DO94855 1032 aaPredicted RBP13.29□□□□□ -0.28
MSH2-201ENST00000233146 GCNT3O95395 438 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 NADKO95544 446 aaPredicted RBP13.29□□□□□ -0.28
MSH2-201ENST00000233146 NTRK1P04629 796 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 GSTM1P09488 218 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 CRHR1P34998 444 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 TAS2R40P59535 323 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 FCHO2Q0JRZ9 810 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 BFSP2Q13515 415 aa13.29□□□□□ -0.28
MSH2-201ENST00000233146 ATG14Q6ZNE5 492 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms