RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 STK17AQ9UEE5 414 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 SEPT3Q9UH03 358 aa15.15■□□□□ 0.02
CLN3-249ENST00000636685 ICE1Q9Y2F5 2266 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 CDRT15L2A8MXV6 281 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 LATO43561 262 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 GIMD1P0DJR0 217 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 MAT2AP31153 395 aaKnown RBP15.14■□□□□ 0.01
CLN3-249ENST00000636685 PSMD8P48556 350 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 CASP4P49662 377 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 SGSHP51688 502 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 HNRNPA1L2Q32P51 320 aaKnown RBP15.14■□□□□ 0.01
CLN3-249ENST00000636685 XKR5Q6UX68 686 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 SND1Q7KZF4 910 aaKnown RBP eCLIP15.14■□□□□ 0.016e-10■■■□□ 15.3
CLN3-249ENST00000636685 IQCHQ86VS3 1027 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 MAPK15Q8TD08 544 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 TMA16Q96EY4 203 aaKnown RBP15.14■□□□□ 0.01
CLN3-249ENST00000636685 APOLD1Q96LR9 279 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 ZSCAN31Q96LW9 406 aaPredicted RBP15.14■□□□□ 0.01
CLN3-249ENST00000636685 ARHGAP20Q9P2F6 1191 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 TJP2Q9UDY2 1190 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 STRIP2Q9ULQ0 834 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 CA5BQ9Y2D0 317 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 PAXBP1Q9Y5B6 917 aa15.14■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3DA0A087WVF3 549 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3IA0A087WXS9 549 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3EA0A087X179 549 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3KA0A087X1G2 549 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 LY6G6EA0A0G2JKS1 128 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3FA6NER0 549 aaPredicted RBP15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3LB9A6J9 549 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 CLIC2O15247 247 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 KIF20AO95235 890 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3HP0C7X1 549 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 GOT1P17174 413 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 BIRC3Q13489 604 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 C9orf64Q5T6V5 341 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 RRAGBQ5VZM2 374 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3GQ6DHY5 549 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3CQ6IPX1 549 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 USP53Q70EK8 1073 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 RSRC2Q7L4I2 434 aaKnown RBP15.13■□□□□ 0.01
CLN3-249ENST00000636685 TBC1D3Q8IZP1 549 aaPredicted RBP15.13■□□□□ 0.01
CLN3-249ENST00000636685 PLD4Q96BZ4 506 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 CYFIP2Q96F07 1278 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 TWNKQ96RR1 684 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 PNPLA8Q9NP80 782 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.13■□□□□ 0.01
CLN3-249ENST00000636685 ENTPD2Q9Y5L3 495 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 USP3Q9Y6I4 520 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 U3KQA8 63 aa15.13■□□□□ 0.01
CLN3-249ENST00000636685 ANKRD17O75179 2603 aaKnown RBP15.13■□□□□ 0.01
CLN3-249ENST00000636685 LZTS3O60299 673 aaPredicted RBP15.12■□□□□ 0.01
CLN3-249ENST00000636685 MAGEC1O60732 1142 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 GP1BAP07359 652 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 TGM2P21980 687 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 ST8SIA6P61647 398 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 SRSF6Q13247 344 aaKnown RBP15.12■□□□□ 0.01
CLN3-249ENST00000636685 SERINC3Q13530 473 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 NCOA4Q13772 614 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 STAT4Q14765 748 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 TRIP4Q15650 581 aaPredicted RBP15.12■□□□□ 0.01
CLN3-249ENST00000636685 POM121L1PQ3SYA9 428 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 PRPF39Q86UA1 669 aaKnown RBP15.12■□□□□ 0.01
CLN3-249ENST00000636685 IFI44Q8TCB0 444 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 PLEKHO2Q8TD55 490 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 SGF29Q96ES7 293 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 MRGPRX3Q96LB0 322 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 FAM129BQ96TA1 746 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 AGPAT3Q9NRZ7 376 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 KCNK4Q9NYG8 393 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 CCDC39Q9UFE4 941 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 ATXN7L1Q9ULK2 861 aaPredicted RBP15.12■□□□□ 0.01
CLN3-249ENST00000636685 TPX2Q9ULW0 747 aaKnown RBP15.12■□□□□ 0.01
CLN3-249ENST00000636685 MAN2B2Q9Y2E5 1009 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 PCDHGA8Q9Y5G5 932 aa15.12■□□□□ 0.01
CLN3-249ENST00000636685 CLEC18AA5D8T8 446 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 TTC34A8MYJ7 566 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 TGFB1I1O43294 461 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 TNFSF15O95150 251 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 VNN1O95497 513 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 DUSP3P51452 185 aaPredicted RBP15.11■□□□□ 0.01
CLN3-249ENST00000636685 OVGP1Q12889 678 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 HIST2H2BCQ6DN03 193 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 CLEC18BQ6UXF7 455 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.11■□□□□ 0.01
CLN3-249ENST00000636685 CLEC14AQ86T13 490 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 UNC93AQ86WB7 457 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 CLEC18CQ8NCF0 446 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 TTC17Q96AE7 1141 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 KLHDC7BQ96G42 594 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 SEMA3CQ99985 751 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 CYTH4Q9UIA0 394 aa15.11■□□□□ 0.01
CLN3-249ENST00000636685 CACNA1DQ01668 2161 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 STX6O43752 255 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 TBL1XO60907 577 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 PIAS2O75928 621 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 GJB6O95452 261 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 ITGB2P05107 769 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 CSKP41240 450 aa15.1■□□□□ 0.01
CLN3-249ENST00000636685 HARS2P49590 506 aaKnown RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms