RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FAM49AQ9H0Q0 323 aaPredicted RBP11.29□□□□□ -0.6
CLN3-244ENST00000636147 POLR1BQ9H9Y6 1135 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 SH3GLB1Q9Y371 365 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 E2F6O75461 281 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 MYL4P12829 197 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 ZNF23P17027 643 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 CLCN3P51790 818 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 KPNA2P52292 529 aaKnown RBP11.29□□□□□ -0.6
CLN3-244ENST00000636147 NDST1P52848 882 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 XIAPP98170 497 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 YWHAHQ04917 246 aaPredicted RBP11.29□□□□□ -0.6
CLN3-244ENST00000636147 TBC1D25Q3MII6 688 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 TATDN1Q6P1N9 297 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 C12orf29Q8N999 325 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 GABPB2Q8TAK5 448 aaPredicted RBP11.29□□□□□ -0.6
CLN3-244ENST00000636147 SNX15Q9NRS6 342 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 COPG2Q9UBF2 871 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 SNX5Q9Y5X3 404 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 MYO18AQ92614 2054 aaKnown RBP11.29□□□□□ -0.6
CLN3-244ENST00000636147 PTPRJQ12913 1337 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TIPRLO75663 272 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SUPT7LO94864 414 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TFPTP0C1Z6 253 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 ADRA2BP18089 450 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TSPAN8P19075 237 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 PSMB4P28070 264 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 PERM1Q5SV97 790 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLN3-244ENST00000636147 IPMKQ8NFU5 416 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TRAPPC12Q8WVT3 735 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 LRRC39Q96DD0 335 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 PLEKHG4BQ96PX9 1271 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SEPHS2Q99611 448 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 PLGRKTQ9HBL7 147 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SPC25Q9HBM1 224 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 RBMX2Q9Y388 322 aaKnown RBP11.28□□□□□ -0.6
CLN3-244ENST00000636147 NUMBLQ9Y6R0 609 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TJP1Q07157 1748 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 HDAC3O15379 428 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SUPT20HL2P0C7V6 817 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TSHRP16473 764 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 GRIA4P48058 902 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 RPL14P50914 215 aaKnown RBP11.28□□□□□ -0.6
CLN3-244ENST00000636147 SLC5A3P53794 718 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 MAP3K10Q02779 954 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TNFAIP1Q13829 316 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 MAPK11Q15759 364 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 FAM83EQ2M2I3 478 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SUPT20HL1Q3ZLR7 823 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SLC9B1Q4ZJI4 515 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 CMPK2Q5EBM0 449 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 ANKRD23Q86SG2 305 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 ZFP28Q8NHY6 868 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SHKBP1Q8TBC3 707 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 OR52B2Q96RD2 323 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 APBA2Q99767 749 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 FSD1LQ9BXM9 530 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 PCDHAC1Q9H158 963 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 LRRC40Q9H9A6 602 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TSR3Q9UJK0 312 aaKnown RBP11.28□□□□□ -0.6
CLN3-244ENST00000636147 TEX264Q9Y6I9 313 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 ATRNL1Q5VV63 1379 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 FAM149AA5PLN7 773 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 SLC15A5A6NIM6 579 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 NR5A2O00482 541 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 METTL18O95568 372 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 HNRNPLP14866 589 aaKnown RBP eCLIP11.28□□□□□ -0.6
CLN3-244ENST00000636147 CKMT2P17540 419 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 PSME3P61289 254 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 BFSP2Q13515 415 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 CCNIQ14094 377 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 TMEM132DQ14C87 1099 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 CCDC88AQ3V6T2 1871 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 ARL10Q8N8L6 244 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 ACAD9Q9H845 621 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 DNAJB4Q9UDY4 337 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 CLEC11AQ9Y240 323 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 PCDHA11Q9Y5I1 949 aa11.28□□□□□ -0.6
CLN3-244ENST00000636147 ZNF541Q9H0D2 1346 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 A0A087WXM4 84 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 BOLA2-SMG1P6H3BVE0 249 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 INPP4BO15327 924 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 ATP5BP06576 529 aaKnown RBP11.27□□□□□ -0.6
CLN3-244ENST00000636147 CCDC130P13994 396 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 ZNF143P52747 638 aaPredicted RBP11.27□□□□□ -0.6
CLN3-244ENST00000636147 PRKAA1Q13131 559 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 FAM183BPQ6ZVS7 135 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 FASTKD5Q7L8L6 764 aaKnown RBP11.27□□□□□ -0.6
CLN3-244ENST00000636147 APBB2Q92870 758 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 GPRASP2Q96D09 838 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 ZMAT2Q96NC0 199 aaKnown RBP11.27□□□□□ -0.6
CLN3-244ENST00000636147 ACE2Q9BYF1 805 aaPredicted RBP11.27□□□□□ -0.6
CLN3-244ENST00000636147 B3GNT5Q9BYG0 378 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 CDH19Q9H159 772 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 STK39Q9UEW8 545 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 EGFL7Q9UHF1 273 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 VANGL2Q9ULK5 521 aa11.27□□□□□ -0.6
CLN3-244ENST00000636147 FARP1Q9Y4F1 1045 aaPredicted RBP11.27□□□□□ -0.6
CLN3-244ENST00000636147 DFFAO00273 331 aa11.27□□□□□ -0.61
CLN3-244ENST00000636147 MRASO14807 208 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms