RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 DDR1Q08345 913 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 OS9Q13438 667 aaPredicted RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SEMA5AQ13591 1074 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 DAG1Q14118 895 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 BRD3Q15059 726 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 MRGPRG-AS1Q2M3A8 158 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ARL13BQ3SXY8 428 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 FAM209BQ5JX69 171 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 PRAMEF19Q5SWL8 479 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 CCDC181Q5TID7 509 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 IL31Q6EBC2 164 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 GGT6Q6P531 493 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 VSTM1Q6UX27 236 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SLC39A5Q6ZMH5 540 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 BEND5Q7L4P6 421 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 CHST15Q7LFX5 561 aaPredicted RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SRLQ86TD4 932 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TTC30AQ86WT1 665 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 MICU3Q86XE3 530 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 GAS2L3Q86XJ1 694 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 CCDC146Q8IYE0 955 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 FAM71DQ8N9W8 422 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 MAML1Q92585 1016 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 PHKBQ93100 1093 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ZNF566Q969W8 418 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TRIM43Q96BQ3 446 aaPredicted RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 NMD3Q96D46 503 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TRMT61AQ96FX7 289 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 C8orf48Q96LL4 319 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 CCDC138Q96M89 665 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 STRBPQ96SI9 672 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SARGQ9BW04 601 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SF3B5Q9BWJ5 86 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 MAGEB5Q9BZ81 275 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 DDX24Q9GZR7 859 aaKnown RBP eCLIP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ZCWPW1Q9H0M4 648 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SLC25A32Q9H2D1 315 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 RMI1Q9H9A7 625 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SMURF2Q9HAU4 748 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SNX15Q9NRS6 342 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 GEMIN8Q9NWZ8 242 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TMOD4Q9NZQ9 345 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 MSRB1Q9NZV6 116 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 COL20A1Q9P218 1284 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 NKX1-2Q9UD57 310 aaPredicted RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 PCDHA7Q9UN72 937 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 HPSEQ9Y251 543 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 PCDHGB1Q9Y5G3 927 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 CDY1Q9Y6F8 540 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 PLCH2O75038 1416 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ATP10BO94823 1461 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 EFCAB6Q5THR3 1501 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 LRRC7Q96NW7 1537 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TMEM131LA2VDJ0 1609 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 LRRC37A3O60309 1634 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 LRP5O75197 1615 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 LRP6O75581 1613 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ALS2Q96Q42 1657 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 PKD1L3Q7Z443 1732 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TIAM2Q8IVF5 1701 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 H0YGN5 161 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 CLIC1O00299 241 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PODXLO00592 558 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 INPPL1O15357 1258 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 CD3EAPO15446 510 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 CCP110O43303 1012 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 FRS3O43559 492 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 CA12O43570 354 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 NCK2O43639 380 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ZC3H11AO75152 810 aaKnown RBP eCLIP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PMPCBO75439 489 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 NDST3O95803 873 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 HRGP04196 525 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 CD63P08962 238 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 TMEM225BP0DP42 221 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 HARSP12081 509 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 RPL17P18621 184 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 DRD1P21728 446 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 TNFSF4P23510 183 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 GKP32189 559 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 GNALP38405 381 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 GSTM5P46439 218 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 BCAT1P54687 386 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 TBX4P57082 545 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 DSCR9P59020 149 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 KRTAP10-3P60369 221 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 EIF4A1P60842 406 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 TXNL4AP83876 142 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 HSF1Q00613 529 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 RNASELQ05823 741 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 GPS1Q13098 491 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 KPNB1Q14974 876 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 MFSD13AQ14CX5 517 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 SF3B4Q15427 424 aaKnown RBP eCLIP1.28□□□□□ -2.23e-8■■■■□ 24.1
SMARCB1-209ENST00000635578 C4orf46Q504U0 113 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 FAM76BQ5HYJ3 339 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 SYCP2LQ5T4T6 812 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 FAXCQ5TGI0 409 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PLAG1Q6DJT9 500 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 HIST2H2BCQ6DN03 193 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms