RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GRIK1P39086 918 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 NEK3P51956 506 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 ELF3P78545 371 aaPredicted RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 ZBTB17Q13105 803 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 PPP2R5DQ14738 602 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 INTS6LQ5JSJ4 861 aaKnown RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 CES4AQ5XG92 561 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 ZCCHC23Q6ZST2 131 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 MRPL10Q7Z7H8 261 aaKnown RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 MTDHQ86UE4 582 aaKnown RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 RTN4RL1Q86UN2 441 aaPredicted RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 METTL23Q86XA0 190 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 RSPH1Q8WYR4 309 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 LRRC37BQ96QE4 947 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 XAB2Q9HCS7 855 aaKnown RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 PNPLA8Q9NP80 782 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 MARCOQ9UEW3 520 aaPredicted RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 BAIAP2L1Q9UHR4 511 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 PPP1R12AO14974 1030 aaPredicted RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 ATP9BO43861 1147 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 STK10O94804 968 aaKnown RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 DDHD2O94830 711 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 FBXO21O94952 628 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 TSHRP16473 764 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 RPL9P32969 192 aaKnown RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 SERPINB4P48594 390 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 GPR15P49685 360 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 PGGT1BP53609 377 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 SLC18A2Q05940 514 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 BZW1Q7L1Q6 419 aaKnown RBP10.91□□□□□ -0.66
CUX1-221ENST00000622516 KDELC2Q7Z4H8 507 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 PARP9Q8IXQ6 854 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 DNAAF3Q8N9W5 541 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 C10orf82Q8WW14 230 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 AZIN2Q96A70 460 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 GORASP1Q9BQQ3 440 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 TSSK1BQ9BXA7 367 aa10.91□□□□□ -0.66
CUX1-221ENST00000622516 FAM159BA6NKW6 160 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 DFFAO00273 331 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 TRDMT1O14717 391 aaKnown RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 JCHAINP01591 159 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 KRT16P08779 473 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 GLUD2P49448 558 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 SARNPP82979 210 aaKnown RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 PAFAH1B3Q15102 231 aaKnown RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 PPM1JQ5JR12 505 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 RNF43Q68DV7 783 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 OTOP3Q7RTS5 596 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 DQX1Q8TE96 717 aaKnown RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 ALKBH8Q96BT7 664 aaKnown RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 GRAMD1AQ96CP6 724 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 PRR11Q96HE9 360 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 FCRL3Q96P31 734 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 ACBD6Q9BR61 282 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 FRMD8Q9BZ67 464 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 UPF3AQ9H1J1 476 aaKnown RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 SSU72Q9NP77 194 aaKnown RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 NDFIP2Q9NV92 336 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 ABI2Q9NYB9 513 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 RCOR3Q9P2K3 495 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 KANSL3Q9P2N6 904 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 DNAJB4Q9UDY4 337 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 TLL2Q9Y6L7 1015 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 RPS6KL1Q9Y6S9 549 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 TDRD15B5MCY1 1934 aaKnown RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 TSC2P49815 1807 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 HACD1B0YJ81 288 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 OPHN1O60890 802 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 CD68P34810 354 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 TM4SF4P48230 202 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 SEMA3BQ13214 749 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 TUSC3Q13454 348 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 DDR2Q16832 855 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 ARL13BQ3SXY8 428 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 SLC39A12Q504Y0 691 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 TAF1BQ53T94 588 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 CERCAMQ5T4B2 595 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 CCSAPQ6IQ19 270 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 FAM171BQ6P995 826 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 LRRC8BQ6P9F7 803 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 RGS9BPQ6ZS82 235 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 TBC1D31Q96DN5 1066 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 VPS11Q9H270 941 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 DMAP1Q9NPF5 467 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 FBXO6Q9NRD1 293 aaPredicted RBP10.9□□□□□ -0.66
CUX1-221ENST00000622516 MOCS1Q9NZB8 636 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 PTCH2Q9Y6C5 1203 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 USH1CQ9Y6N9 552 aa10.9□□□□□ -0.66
CUX1-221ENST00000622516 FAM237BA0A1B0GVD1 139 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 ZNF623O75123 536 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 SOAT2O75908 522 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 KRT38O76015 456 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 FDFT1P37268 417 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 OR1G1P47890 313 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 SLC5A3P53794 718 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 DSC3Q14574 896 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 MBTPS1Q14703 1052 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 CRYMQ14894 314 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 SETDB1Q15047 1291 aa10.89□□□□□ -0.67
CUX1-221ENST00000622516 PARP6Q2NL67 630 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms