RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ACAP1Q15027 740 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 C2orf27AQ580R0 203 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 EMC10Q5UCC4 262 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 LRRC31Q6UY01 552 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 ANKS1BQ7Z6G8 1248 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 CCAR2Q8N163 923 aaKnown RBP17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 SPEM1Q8N4L4 309 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 RPLP0P6Q8NHW5 317 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 ZNF564Q8TBZ8 553 aaPredicted RBP17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 LMLNQ96KR4 655 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 BAG1Q99933 345 aaPredicted RBP17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 ABCB8Q9NUT2 735 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 SPATA6Q9NWH7 488 aaPredicted RBP17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 IP6K2Q9UHH9 426 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 HCN2Q9UL51 889 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 INTUQ9ULD6 942 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 STARD13Q9Y3M8 1113 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 EPN1Q9Y6I3 576 aaPredicted RBP17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 CHURC1-FNTBB4DL54 471 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 EIF3CLB5ME19 914 aaKnown RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 E9PAM4 449 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 MYO1FO00160 1098 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 GALR2O43603 387 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 SRGAP2O75044 1071 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 LRCH4O75427 683 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 NDUFA10O95299 355 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 MIPP30301 263 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 MAGEA1P43355 309 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 MRPS21P82921 87 aaKnown RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 NRG1Q02297 640 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 PIGHQ14442 188 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 FSCBQ5H9T9 825 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 DAB2IPQ5VWQ8 1189 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 TMEM215Q68D42 235 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 RAD9BQ6WBX8 426 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 KIAA0907Q7Z7F0 614 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 C1orf210Q8IVY1 113 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 NIPA2Q8N8Q9 360 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 EIF3CQ99613 913 aaKnown RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 C2orf42Q9NWW7 574 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 GGA2Q9UJY4 613 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 FZD10Q9ULW2 581 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 MYO18AQ92614 2054 aaKnown RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 FAM72CH0Y354 149 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 H0Y626 953 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 ATG13O75143 517 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 CNTN5O94779 1100 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 PABPC1P11940 636 aaKnown RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 CD70P32970 193 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 PCK1P35558 622 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 TIE1P35590 1138 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 GSDMDP57764 484 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 LMAN2Q12907 356 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 SPA17Q15506 151 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 ALFQ53S48 1182 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 EFHC2Q5JST6 749 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 FAM72AQ5TYM5 149 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 MANEALQ5VSG8 457 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 FAM72DQ6L9T8 149 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 CHST9Q7L1S5 443 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 FAM72BQ86X60 149 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 CCDC117Q8IWD4 279 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 PYROXD2Q8N2H3 581 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 IL17RCQ8NAC3 791 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 SLC35G2Q8TBE7 412 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 KCNV2Q8TDN2 545 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 PEBP4Q96S96 227 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 NCAPGQ9BPX3 1015 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 OSGEPQ9NPF4 335 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 PCSK1NQ9UHG2 260 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 PCDHA13Q9Y5I0 950 aa17.06■□□□□ 0.32
CCDC28A-202ENST00000611852 CLDN11O75508 207 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 CDH4P55283 916 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 EIF4HQ15056 248 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 CXorf57Q6NSI4 855 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 CYP4V2Q6ZWL3 525 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 ADIPOR2Q86V24 386 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 RHOT2Q8IXI1 618 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 MAML2Q8IZL2 1156 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 AHI1Q8N157 1196 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 ALLCQ8N6M5 410 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 ZNF513Q8N8E2 541 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 WFIKKN2Q8TEU8 576 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 RFFLQ8WZ73 363 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 ANP32BQ92688 251 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 ZDHHC4Q9NPG8 344 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 ELOVL2Q9NXB9 296 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 MPP6Q9NZW5 540 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 PPARGC1AQ9UBK2 798 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 USP18Q9UMW8 372 aa17.05■□□□□ 0.32
CCDC28A-202ENST00000611852 DOCK4Q8N1I0 1966 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 LAMTOR5O43504 91 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 PRPSAP2O60256 369 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 LRIG2O94898 1065 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 TCF4P15884 667 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 L1CAMP32004 1257 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 CXCL12P48061 93 aa17.04■□□□□ 0.32
CCDC28A-202ENST00000611852 CCR3P51677 355 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms