RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PACS1Q6VY07 963 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 NAPRTQ6XQN6 538 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 TSHZ1Q6ZSZ6 1077 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 ARCQ7LC44 396 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 KBTBD6Q86V97 674 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 JADE3Q92613 823 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 TBC1D30Q9Y2I9 924 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 A0A0J9YVX5 310 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 TRDMT1O14717 391 aaKnown RBP18.82■□□□□ 0.6
UPF1-210ENST00000600689 BIRC5O15392 142 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 KCNT2Q6UVM3 1135 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 ADGRG6Q86SQ4 1221 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 SNX31Q8N9S9 440 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 RCN3Q96D15 328 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 CATSPER2Q96P56 530 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 LGMNQ99538 433 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 SNRNP25Q9BV90 132 aaKnown RBP18.82■□□□□ 0.6
UPF1-210ENST00000600689 FRMD8P1Q9BZ68 369 aaPredicted RBP18.82■□□□□ 0.6
UPF1-210ENST00000600689 XYLT2Q9H1B5 865 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 PNPLA8Q9NP80 782 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 PCDHGC3Q9UN70 934 aa18.82■□□□□ 0.6
UPF1-210ENST00000600689 ADGRA2Q96PE1 1338 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 MED7O43513 233 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 TPP2P29144 1249 aaPredicted RBP18.81■□□□□ 0.6
UPF1-210ENST00000600689 IRF9Q00978 393 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 MS4A2Q01362 244 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 EEF1DP3Q658K8 133 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 TRAPPC12Q8WVT3 735 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 CDHR1Q96JP9 859 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 ZNF512Q96ME7 567 aaPredicted RBP18.81■□□□□ 0.6
UPF1-210ENST00000600689 KCNK16Q96T55 309 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 PKP2Q99959 881 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 ATP6V1G1O75348 118 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 NFICP08651 508 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 CDK4P11802 303 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 CPA3P15088 417 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 GLRBP48167 497 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 MCCD1P59942 119 aaPredicted RBP18.81■□□□□ 0.6
UPF1-210ENST00000600689 TMEM62Q0P6H9 643 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 TAZQ16635 292 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 RARS2Q5T160 578 aaKnown RBP18.81■□□□□ 0.6
UPF1-210ENST00000600689 TRIM67Q6ZTA4 783 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 CYP4V2Q6ZWL3 525 aaPredicted RBP18.81■□□□□ 0.6
UPF1-210ENST00000600689 LILRA2Q8N149 483 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 SLC4A11Q8NBS3 891 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 LPIN3Q9BQK8 851 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 NUF2Q9BZD4 464 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 CAAP1Q9H8G2 361 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 PCDH18Q9HCL0 1135 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 PTTG2Q9NZH5 202 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 SH3BP1Q9Y3L3 701 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 PCDHA11Q9Y5I1 949 aa18.81■□□□□ 0.6
UPF1-210ENST00000600689 ADM5C9JUS6 153 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 GLRA3O75311 464 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 DDNO94850 711 aaPredicted RBP18.8■□□□□ 0.6
UPF1-210ENST00000600689 MPSTP25325 297 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 L1CAMP32004 1257 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 TRIML2Q8N7C3 387 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 KLHL23Q8NBE8 558 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 ANKRD36BP1Q96IX9 119 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 COPG2Q9UBF2 871 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 PSMD13Q9UNM6 376 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 CENPFP49454 3210 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 CYP2F1P24903 491 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 ZNF143P52747 638 aaPredicted RBP18.8■□□□□ 0.6
UPF1-210ENST00000600689 MTTPP55157 894 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 STILQ15468 1287 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 FAM47CQ5HY64 1035 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 FAM219BQ5XKK7 198 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 CNPY3Q9BT09 278 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 LTFP02788 710 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 PRKCBP05771 671 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 UBA1P22314 1058 aaKnown RBP18.8■□□□□ 0.6
UPF1-210ENST00000600689 SLC5A2P31639 672 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 NCAPG2Q86XI2 1143 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 CCDC28BQ9BUN5 200 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 Q9H521 79 aa18.8■□□□□ 0.6
UPF1-210ENST00000600689 MAFBQ9Y5Q3 323 aaPredicted RBP18.8■□□□□ 0.6
UPF1-210ENST00000600689 PTPN1P18031 435 aaKnown RBP18.79■□□□□ 0.6
UPF1-210ENST00000600689 OGFRL1Q5TC84 451 aaPredicted RBP18.79■□□□□ 0.6
UPF1-210ENST00000600689 PYROXD2Q8N2H3 581 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 TDRD5Q8NAT2 981 aaKnown RBP18.79■□□□□ 0.6
UPF1-210ENST00000600689 CCNYQ8ND76 341 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 PCYT2Q99447 389 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 HOXC6P09630 235 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 ARSAP15289 507 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 CDH5P33151 784 aaPredicted RBP18.79■□□□□ 0.6
UPF1-210ENST00000600689 ARL2P36404 184 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 SERPINB9P50453 376 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 CDH15P55291 814 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 PPIDQ08752 370 aaKnown RBP18.79■□□□□ 0.6
UPF1-210ENST00000600689 MAP1SQ66K74 1059 aaPredicted RBP18.79■□□□□ 0.6
UPF1-210ENST00000600689 HEATR6Q6AI08 1181 aaKnown RBP18.79■□□□□ 0.6
UPF1-210ENST00000600689 GADL1Q6ZQY3 521 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 MOB2Q70IA6 237 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 DSELQ8IZU8 1212 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 MIPOL1Q8TD10 442 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 CDKL2Q92772 493 aa18.79■□□□□ 0.6
UPF1-210ENST00000600689 MRPL4Q9BYD3 311 aaKnown RBP18.79■□□□□ 0.6
UPF1-210ENST00000600689 DHX33Q9H6R0 707 aaKnown RBP18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms