RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 UCMAQ8WVF2 138 aa16.74■□□□□ 0.27
LSM4-206ENST00000600289 VCPIP1Q96JH7 1222 aa16.74■□□□□ 0.27
LSM4-206ENST00000600289 LMLNQ96KR4 655 aa16.74■□□□□ 0.27
LSM4-206ENST00000600289 HHIPQ96QV1 700 aa16.74■□□□□ 0.27
LSM4-206ENST00000600289 TBCBQ99426 244 aa16.74■□□□□ 0.27
LSM4-206ENST00000600289 XPO7Q9UIA9 1087 aaKnown RBP16.74■□□□□ 0.27
LSM4-206ENST00000600289 CAPN11Q9UMQ6 739 aa16.74■□□□□ 0.27
LSM4-206ENST00000600289 TNRC6BQ9UPQ9 1833 aaKnown RBP16.74■□□□□ 0.27
LSM4-206ENST00000600289 C2CD4BA6NLJ0 364 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 F5H5T6 163 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 CBFA2T2O43439 604 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 GDF9O60383 454 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 TFE3P19532 575 aaPredicted RBP16.73■□□□□ 0.27
LSM4-206ENST00000600289 KCNA4P22459 653 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 PTPN9P43378 593 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 RNASE9P60153 205 aaKnown RBP16.73■□□□□ 0.27
LSM4-206ENST00000600289 ZBED6P86452 979 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 DEUP1Q05D60 604 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 NME3Q13232 169 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 C5orf22Q49AR2 442 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 RAP1GAP2Q684P5 730 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 TMEM92Q6UXU6 159 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 SND1Q7KZF4 910 aaKnown RBP eCLIP16.73■□□□□ 0.27
LSM4-206ENST00000600289 RNF34Q969K3 372 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 MYEOVQ96EZ4 313 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 XPO4Q9C0E2 1151 aaKnown RBP16.73■□□□□ 0.27
LSM4-206ENST00000600289 HAUS4Q9H6D7 363 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 CD248Q9HCU0 757 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 POLMQ9NP87 494 aaPredicted RBP16.73■□□□□ 0.27
LSM4-206ENST00000600289 SEPT11Q9NVA2 429 aaKnown RBP16.73■□□□□ 0.27
LSM4-206ENST00000600289 POLR3BQ9NW08 1133 aaPredicted RBP16.73■□□□□ 0.27
LSM4-206ENST00000600289 ELOVL2Q9NXB9 296 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 THAP10Q9P2Z0 257 aaPredicted RBP16.73■□□□□ 0.27
LSM4-206ENST00000600289 GGA2Q9UJY4 613 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 ASH1LQ9NR48 2969 aaKnown RBP16.73■□□□□ 0.27
LSM4-206ENST00000600289 LAMA1P25391 3075 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 AKAP13Q12802 2813 aa16.73■□□□□ 0.27
LSM4-206ENST00000600289 CEP192Q8TEP8 1941 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 DMXL2Q8TDJ6 3036 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 CHD5Q8TDI0 1954 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 SYNJ2BP-COX16A0A087WUM0 186 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 SIGLEC16A6NMB1 481 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 AXIN1O15169 862 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 ALDH1A2O94788 518 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 LUC7L3O95232 432 aaKnown RBP16.72■□□□□ 0.27
LSM4-206ENST00000600289 PABPC1P11940 636 aaKnown RBP16.72■□□□□ 0.27
LSM4-206ENST00000600289 GZMAP12544 262 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 TNFAIP3P21580 790 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 HOXC13P31276 330 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 RDXP35241 583 aaKnown RBP16.72■□□□□ 0.27
LSM4-206ENST00000600289 RPS24P62847 133 aaKnown RBP16.72■□□□□ 0.27
LSM4-206ENST00000600289 LPAL2Q16609 132 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 RABGAP1LQ5R372 815 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 PPP1R15BQ5SWA1 713 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 HGSNATQ68CP4 663 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 TMEM215Q68D42 235 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 SDE2Q6IQ49 451 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 PRR23CQ6ZRP0 262 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 STRADAQ7RTN6 431 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 ZNF571Q7Z3V5 609 aaPredicted RBP16.72■□□□□ 0.27
LSM4-206ENST00000600289 ADIPOR2Q86V24 386 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 MFN1Q8IWA4 741 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 LGI2Q8N0V4 545 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 WFDC5Q8TCV5 224 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 GAB3Q8WWW8 586 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 CENPIQ92674 756 aaPredicted RBP16.72■□□□□ 0.27
LSM4-206ENST00000600289 CFAP57Q96MR6 1250 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 WDCPQ9H6R7 721 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 COX16Q9P0S2 106 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 HS3ST4Q9Y661 456 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 BZW2Q9Y6E2 419 aaKnown RBP16.72■□□□□ 0.27
LSM4-206ENST00000600289 ITPR1Q14643 2758 aa16.72■□□□□ 0.27
LSM4-206ENST00000600289 SMG1Q96Q15 3661 aaKnown RBP16.72■□□□□ 0.27
LSM4-206ENST00000600289 A0A1W2PQF6 199 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 C1QTNF9BB2RNN3 333 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 HRO43593 1189 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 LRP3O75074 770 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 PAGE1O75459 146 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 GYPCP04921 128 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 C1QTNF9P0C862 333 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 KRT3P12035 628 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 HOXB2P14652 356 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 SDC4P31431 198 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 KLHL30Q0D2K2 578 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 AUHQ13825 339 aaKnown RBP16.71■□□□□ 0.27
LSM4-206ENST00000600289 HEATR6Q6AI08 1181 aaKnown RBP16.71■□□□□ 0.27
LSM4-206ENST00000600289 CHPFQ8IZ52 775 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 MCOLN2Q8IZK6 566 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 EMC1Q8N766 993 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 JOSD2Q8TAC2 188 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 RXFP2Q8WXD0 754 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 C1orf74Q96LT6 269 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 ACOX2Q99424 681 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 SELENOOQ9BVL4 669 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 TKTL2Q9H0I9 626 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 ZDHHC4Q9NPG8 344 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 SEMA4GQ9NTN9 838 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 ABCB8Q9NUT2 735 aa16.71■□□□□ 0.27
LSM4-206ENST00000600289 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.71■□□□□ 0.273e-6■■■□□ 18.4
LSM4-206ENST00000600289 A0A1B0GVM2 712 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms