RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SLC24A2Q9UI40 661 aa20.89■□□□□ 0.94
UPF1-207ENST00000599848 PCDHA3Q9Y5H8 950 aa20.89■□□□□ 0.94
UPF1-207ENST00000599848 SETD1BQ9UPS6 1966 aaKnown RBP20.89■□□□□ 0.94
UPF1-207ENST00000599848 ADAMTS13Q76LX8 1427 aa20.89■□□□□ 0.94
UPF1-207ENST00000599848 NCF1BA6NI72 391 aaPredicted RBP20.89■□□□□ 0.93
UPF1-207ENST00000599848 NCF1CA8MVU1 366 aaPredicted RBP20.89■□□□□ 0.93
UPF1-207ENST00000599848 HIST1H2ABP04908 130 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 NCF1P14598 390 aaPredicted RBP20.89■□□□□ 0.93
UPF1-207ENST00000599848 NOS2P35228 1153 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 BEX3Q00994 111 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 HIST3H2AQ7L7L0 130 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 HIST1H2ACQ93077 130 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 ZNF229Q9UJW7 825 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 ZNF232Q9UNY5 417 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 RAP1GAPP47736 663 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 GLUD2P49448 558 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 EDEM1Q92611 657 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 LRRC1Q9BTT6 524 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 PDGFDQ9GZP0 370 aaPredicted RBP20.89■□□□□ 0.93
UPF1-207ENST00000599848 PPP1R37O75864 691 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 SEC24DO94855 1032 aaPredicted RBP20.89■□□□□ 0.93
UPF1-207ENST00000599848 FARP2O94887 1054 aaPredicted RBP20.89■□□□□ 0.93
UPF1-207ENST00000599848 MDH1P40925 334 aaKnown RBP20.89■□□□□ 0.93
UPF1-207ENST00000599848 TAF13Q15543 124 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 BTNL9Q6UXG8 535 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 TIFAQ96CG3 184 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 PRMT1Q99873 361 aaKnown RBP20.89■□□□□ 0.93
UPF1-207ENST00000599848 ABI3Q9P2A4 366 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 GNPTGQ9UJJ9 305 aa20.89■□□□□ 0.93
UPF1-207ENST00000599848 SAC3D1A6NKF1 404 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 LACTBL1A8MY62 500 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 ALPPL2P10696 532 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 KRR1Q13601 381 aaKnown RBP20.88■□□□□ 0.93
UPF1-207ENST00000599848 TCEAL5Q5H9L2 206 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 PNMA5Q96PV4 448 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 THAP2Q9H0W7 228 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 AGPAT5Q9NUQ2 364 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 KCTD5Q9NXV2 234 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 DIP2CQ9Y2E4 1556 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 TAS1R2Q8TE23 839 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 ACOX2Q99424 681 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 MARCOQ9UEW3 520 aaPredicted RBP20.88■□□□□ 0.93
UPF1-207ENST00000599848 C15orf38-AP3S2A0A0A6YYH1 394 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 KRT33AO76009 404 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 SELPP16109 830 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 CCR3P51677 355 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 CCDC153Q494R4 210 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 ARPINQ7Z6K5 226 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 GPR135Q8IZ08 494 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 TBL1YQ9BQ87 522 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 SPATA5L1Q9BVQ7 753 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 MRPS26Q9BYN8 205 aaKnown RBP20.88■□□□□ 0.93
UPF1-207ENST00000599848 PCDH9Q9HC56 1237 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 GLTPD2A6NH11 291 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 PTPN1P18031 435 aaKnown RBP20.88■□□□□ 0.93
UPF1-207ENST00000599848 SPPL2BQ8TCT7 592 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 SLC2A14Q8TDB8 520 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 ELOVL2Q9NXB9 296 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 SH3BP4Q9P0V3 963 aa20.88■□□□□ 0.93
UPF1-207ENST00000599848 CNOT3O75175 753 aaKnown RBP20.87■□□□□ 0.93
UPF1-207ENST00000599848 IFNA16P05015 189 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 CHN1P15882 459 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 CCL23P55773 120 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 NUP107P57740 925 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 FAM45BPQ6NSW5 357 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 FBXO38Q6PIJ6 1188 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 ERCC6L2Q5T890 1561 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 FRMPD4Q14CM0 1322 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 PSMC3P17980 439 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 PGAM1P18669 254 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 SCNN1GP51170 649 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 MAPK7Q13164 816 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 IL17RAQ96F46 866 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 ZNF112Q9UJU3 913 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 PLAGL2Q9UPG8 496 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 RGS14O43566 566 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 ARID5BQ14865 1188 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 PTAR1Q7Z6K3 402 aaPredicted RBP20.87■□□□□ 0.93
UPF1-207ENST00000599848 TFAP2DQ7Z6R9 452 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 NSL1Q96IY1 281 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 SOX6P35712 828 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 C11orf63Q6NUN7 778 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 FBXO36Q8NEA4 188 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 PORCNQ9H237 461 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 COMMD8Q9NX08 183 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 ADPRHL2Q9NX46 363 aa20.87■□□□□ 0.93
UPF1-207ENST00000599848 YBX3P16989 372 aaKnown RBP eCLIP20.86■□□□□ 0.938e-7■■■□□ 16.6
UPF1-207ENST00000599848 PCYT1AP49585 367 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 CYTH1Q15438 398 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 CRY1Q16526 586 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 CHPFQ8IZ52 775 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 HTR3CQ8WXA8 447 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 WNT8BQ93098 351 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 BDNFP23560 247 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 ACAT1P24752 427 aaKnown RBP20.86■□□□□ 0.93
UPF1-207ENST00000599848 PRPF39Q86UA1 669 aaKnown RBP20.86■□□□□ 0.93
UPF1-207ENST00000599848 GP5P40197 560 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 ORC1Q13415 861 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 RAET1GQ6H3X3 334 aa20.86■□□□□ 0.93
UPF1-207ENST00000599848 MAP4K3Q8IVH8 894 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms