RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ADAMTS9Q9P2N4 1935 aa10.15□□□□□ -0.79
VRK3-216ENST00000599342 GTPBP10A4D1E9 387 aaKnown RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 TMEM8BA6NDV4 472 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 SH3BP5O60239 455 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 GJB3O75712 270 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 FSBPO95073 299 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 TOP3BO95985 862 aaKnown RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 SRPRAP08240 638 aaKnown RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 SLC2A3P11169 496 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 SLC9A1P19634 815 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 ABCB4P21439 1286 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 TACR2P21452 398 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 SNX16P57768 344 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 CDK17Q00537 523 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 PTK2Q05397 1052 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 TRIP6Q15654 476 aaKnown RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 ZNF423Q2M1K9 1284 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 DCAF6Q58WW2 860 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 ZC3H12AQ5D1E8 599 aaKnown RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 PITRM1Q5JRX3 1037 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 TTC39BQ5VTQ0 682 aaPredicted RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 ADAT2Q7Z6V5 191 aaKnown RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 FAM114A1Q8IWE2 563 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 DHX40Q8IX18 779 aaKnown RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 MLKLQ8NB16 471 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 RNF34Q969K3 372 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 TTC17Q96AE7 1141 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 CAMK1GQ96NX5 476 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 RSPH9Q9H1X1 276 aaPredicted RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 SYNCQ9H7C4 482 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 ACP6Q9NPH0 428 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.14□□□□□ -0.79
VRK3-216ENST00000599342 DDIT4Q9NX09 232 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 CYTH4Q9UIA0 394 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 XPO7Q9UIA9 1087 aaKnown RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 WASF3Q9UPY6 502 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.14□□□□□ -0.79
VRK3-216ENST00000599342 NEUROG3Q9Y4Z2 214 aa10.14□□□□□ -0.79
VRK3-216ENST00000599342 SYNJ2BP-COX16A0A087WUM0 186 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 EDDM13A0A1B0GTR0 161 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 A0A1B0GVT2 93 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 FAM47DPA6NHR8 397 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 BECN2A8MW95 431 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 KCNU1A8MYU2 1149 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 HSF2BPO75031 334 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 SIN3BO75182 1162 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 IGLV3-25P01717 112 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 GLI1P08151 1106 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 ZNF883P0CG24 379 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 C7P10643 843 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 PON1P27169 355 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 CCR1P32246 355 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 KRT9P35527 623 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 NNMTP40261 264 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 GRIA4P48058 902 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 CSNK1EP49674 416 aaKnown RBP10.13□□□□□ -0.79
VRK3-216ENST00000599342 FAM193AP78312 1265 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 ECT2LQ008S8 904 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 HLA-BQ31612 363 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 HNRNPA1L2Q32P51 320 aaKnown RBP10.13□□□□□ -0.79
VRK3-216ENST00000599342 FSCBQ5H9T9 825 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 EFHC1Q5JVL4 640 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 RABGAP1LQ5R372 815 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 LRSAM1Q6UWE0 723 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 MMS22LQ6ZRQ5 1243 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 C11orf57Q6ZUT1 292 aaPredicted RBP10.13□□□□□ -0.79
VRK3-216ENST00000599342 USP30Q70CQ3 517 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 PASD1Q8IV76 773 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 KDM1BQ8NB78 822 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 SETD7Q8WTS6 366 aaKnown RBP10.13□□□□□ -0.79
VRK3-216ENST00000599342 SHC3Q92529 594 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 BIRC7Q96CA5 298 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 MYEOVQ96EZ4 313 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 MYO19Q96H55 970 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 PPP1R13BQ96KQ4 1090 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 LMLNQ96KR4 655 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 CPXM1Q96SM3 734 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 OMDQ99983 421 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 PABPC3Q9H361 631 aaKnown RBP10.13□□□□□ -0.79
VRK3-216ENST00000599342 MTG2Q9H4K7 406 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 TM7SF3Q9NS93 570 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 ASNSD1Q9NWL6 643 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 FBXL12Q9NXK8 326 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 COX16Q9P0S2 106 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 DACH1Q9UI36 760 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 KLK13Q9UKR3 277 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 INTS6Q9UL03 887 aaKnown RBP10.13□□□□□ -0.79
VRK3-216ENST00000599342 PCDHGC3Q9UN70 934 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 ERVW-1Q9UQF0 538 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 PI4KAP42356 2102 aa10.13□□□□□ -0.79
VRK3-216ENST00000599342 A0A1B0GVM2 712 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 A0A1W2PP55 124 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 TARSL2A2RTX5 802 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 TCAF2A6NFQ2 919 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 PES1O00541 588 aaKnown RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 MID1O15344 667 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 PRKCSHP14314 528 aaPredicted RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 CD27P26842 260 aa10.12□□□□□ -0.79
VRK3-216ENST00000599342 CTSOP43234 321 aaPredicted RBP10.12□□□□□ -0.79
VRK3-216ENST00000599342 OXCT1P55809 520 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms