RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CXCL12P48061 93 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 NUBP1P53384 320 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 CSTF1Q05048 431 aaKnown RBP14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 MANEALQ5VSG8 457 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 CXorf57Q6NSI4 855 aaKnown RBP14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 SCYL2Q6P3W7 929 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 TMEM92Q6UXU6 159 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 MFN1Q8IWA4 741 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 CCAR2Q8N163 923 aaKnown RBP14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 TXNDC5Q8NBS9 432 aaKnown RBP14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 EXOC4Q96A65 974 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 TRIM11Q96F44 468 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 CCDC42Q96M95 316 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 RPRD1AQ96P16 312 aaPredicted RBP14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 NUP85Q9BW27 656 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 PRMT8Q9NR22 394 aaPredicted RBP14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 GPATCH2LQ9NWQ4 482 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 ELOVL2Q9NXB9 296 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 MPP6Q9NZW5 540 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 ZNF212Q9UDV6 495 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 NEU3Q9UQ49 428 aa14.67□□□□□ -0.06
SHKBP1-217ENST00000598558 IGLV3-10A0A075B6K4 115 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 E9PAM4 449 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 LAMTOR5O43504 91 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 SRGAP2O75044 1071 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 LUC7L3O95232 432 aaKnown RBP14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 H2AFZP0C0S5 128 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 PABPC1P11940 636 aaKnown RBP14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 MZF1P28698 734 aaPredicted RBP14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 PXNP49023 591 aaPredicted RBP14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 MRPS21P82921 87 aaKnown RBP14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 CA9Q16790 459 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 FUT11Q495W5 492 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 H2AFVQ71UI9 128 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 TMEM139Q8IV31 216 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 APCDD1Q8J025 514 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 FNIP1Q8TF40 1166 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 NTAN1Q96AB6 310 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 ERLEC1Q96DZ1 483 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 ALG14Q96F25 216 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 PANX2Q96RD6 677 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 OSBPL2Q9H1P3 480 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 DEF6Q9H4E7 631 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 CD248Q9HCU0 757 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 PCSK1NQ9UHG2 260 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 GGA2Q9UJY4 613 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 FZD10Q9ULW2 581 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 TFR2Q9UP52 801 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 SCINQ9Y6U3 715 aa14.66□□□□□ -0.06
SHKBP1-217ENST00000598558 SOWAHDA6NJG2 315 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 LRCH4O75427 683 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 IL1R2P27930 398 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 MIPP30301 263 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 CTSOP43234 321 aaPredicted RBP14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 DMC1Q14565 340 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 MBLAC2Q68D91 279 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 TXNRD3NBQ6F5E7 133 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 RAD9BQ6WBX8 426 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 CHST9Q7L1S5 443 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 SYT13Q7L8C5 426 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 ANKS1BQ7Z6G8 1248 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 SLFN11Q7Z7L1 901 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 ZNF513Q8N8E2 541 aaPredicted RBP14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 CYB5D2Q8WUJ1 264 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 NELL1Q92832 810 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 MRPL47Q9HD33 250 aaKnown RBP14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 OSGEPQ9NPF4 335 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 NDFIP2Q9NV92 336 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 FAM86C1Q9NVL1 165 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 CACNA2D2Q9NY47 1150 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 THAP10Q9P2Z0 257 aaPredicted RBP14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 OR12D3Q9UGF7 316 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 MMP17Q9ULZ9 603 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 OR51B4Q9Y5P0 310 aa14.65□□□□□ -0.06
SHKBP1-217ENST00000598558 A0A1B0GVM2 712 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 A0A1W2PQF6 199 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 TCAF2A6NFQ2 919 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 H0Y626 953 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 LRIG2O94898 1065 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 PAPSS2O95340 614 aaPredicted RBP14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 LCA5LO95447 670 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 TMEM253P0C7T8 217 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 CSKP41240 450 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 IL12RB1P42701 662 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 CCR3P51677 355 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 NRG1Q02297 640 aaPredicted RBP14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 SCAPQ12770 1279 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 SEMA3BQ13214 749 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 PTPRNQ16849 979 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 RABGAP1LQ5R372 815 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 KIAA1211LQ6NV74 962 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 TTC17Q96AE7 1141 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 MYO19Q96H55 970 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 HHIPQ96QV1 700 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 PHOX2BQ99453 314 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 IER2Q9BTL4 223 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 CIPCQ9C0C6 399 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 TMEM51Q9NW97 253 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 ANAPC7Q9UJX3 599 aa14.64□□□□□ -0.07
SHKBP1-217ENST00000598558 FBXO4Q9UKT5 387 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms