RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ATG4AQ8WYN0 398 aa15.92■□□□□ 0.14
UPF1-206ENST00000598471 PABPC5Q96DU9 382 aaKnown RBP15.92■□□□□ 0.14
UPF1-206ENST00000598471 PRMT1Q99873 361 aaKnown RBP15.92■□□□□ 0.14
UPF1-206ENST00000598471 GDE1Q9NZC3 331 aa15.92■□□□□ 0.14
UPF1-206ENST00000598471 STOML2Q9UJZ1 356 aa15.92■□□□□ 0.14
UPF1-206ENST00000598471 R3HDM2Q9Y2K5 976 aaKnown RBP15.92■□□□□ 0.14
UPF1-206ENST00000598471 CDH23Q9H251 3354 aa15.92■□□□□ 0.14
UPF1-206ENST00000598471 WASH4PA8MWX3 477 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 KLKB1P03952 638 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 TCF3P15923 654 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 PECAM1P16284 738 aaPredicted RBP15.91■□□□□ 0.14
UPF1-206ENST00000598471 CHKAP35790 457 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 MTHFRP42898 656 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 VCPP55072 806 aaKnown RBP15.91■□□□□ 0.14
UPF1-206ENST00000598471 DR1Q01658 176 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 SNX1Q13596 522 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 BYSLQ13895 437 aaKnown RBP15.91■□□□□ 0.14
UPF1-206ENST00000598471 FAM133BQ5BKY9 247 aaKnown RBP15.91■□□□□ 0.14
UPF1-206ENST00000598471 Q6ZNB5 142 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 CDKL3Q8IVW4 592 aaPredicted RBP15.91■□□□□ 0.14
UPF1-206ENST00000598471 RTL3Q8N8U3 475 aaKnown RBP15.91■□□□□ 0.14
UPF1-206ENST00000598471 LRRN4CLQ8ND94 238 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 ADAMTS19Q8TE59 1207 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 NKD2Q969F2 451 aaPredicted RBP15.91■□□□□ 0.14
UPF1-206ENST00000598471 CCDC114Q96M63 670 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 PRDM6Q9NQX0 595 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 CLEC1BQ9P126 229 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 PCYOX1Q9UHG3 505 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 NEU3Q9UQ49 428 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 ZNF148Q9UQR1 794 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 TRANK1O15050 2925 aa15.91■□□□□ 0.14
UPF1-206ENST00000598471 PRRC2BQ5JSZ5 2229 aaKnown RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 GOLGA6L7A0A1B0GV03 622 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 FAM187AA6NFU0 413 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 DRGXA6NNA5 263 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 H7C0C1 242 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 PPP1R12AO14974 1030 aaPredicted RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 NCAM2O15394 837 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 MFSD11O43934 449 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 TBX10O75333 385 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 ECEL1O95672 775 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 GAS8O95995 478 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 MX2P20592 715 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 ATP5OP48047 213 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 USP4Q13107 963 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 XRCC4Q13426 336 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 COL19A1Q14993 1142 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 PDK1Q15118 436 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 NPNTQ6UXI9 565 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 SYDE1Q6ZW31 735 aaPredicted RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 ARID3BQ8IVW6 561 aaPredicted RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 NPAS3Q8IXF0 933 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 ZNF683Q8IZ20 524 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 CELF5Q8N6W0 485 aaKnown RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 KIAA1958Q8N8K9 716 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 HJURPQ8NCD3 748 aaPredicted RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 ATL2Q8NHH9 583 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 SLC35B2Q8TB61 432 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 ZSCAN18Q8TBC5 510 aaPredicted RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 USP13Q92995 863 aaPredicted RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 WBP2Q969T9 261 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 FERMT1Q9BQL6 677 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 BRD8Q9H0E9 1235 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 SMG9Q9H0W8 520 aaKnown RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 ETNK2Q9NVF9 386 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 TMEM248Q9NWD8 314 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 DTLQ9NZJ0 730 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 TBC1D14Q9P2M4 693 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 SAE1Q9UBE0 346 aaPredicted RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 DNPEPQ9ULA0 475 aa15.9■□□□□ 0.14
UPF1-206ENST00000598471 DRG1Q9Y295 367 aaKnown RBP15.9■□□□□ 0.14
UPF1-206ENST00000598471 CFAP69A5D8W1 941 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 HACD1B0YJ81 288 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 SLC9A3R1O14745 358 aaPredicted RBP15.89■□□□□ 0.13
UPF1-206ENST00000598471 GREM1O60565 184 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 PRAMEF12O95522 483 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 ITGAVP06756 1048 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 RBP3P10745 1247 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 SLC6A4P31645 630 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 MAPKAPK2P49137 400 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 CDH4P55283 916 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 ZXDBP98169 803 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 GBE1Q04446 702 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 CBX2Q14781 532 aaPredicted RBP15.89■□□□□ 0.13
UPF1-206ENST00000598471 ZNF77Q15935 545 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 C5orf22Q49AR2 442 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 TTC27Q6P3X3 843 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 RFWD3Q6PCD5 774 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 DARS2Q6PI48 645 aaKnown RBP15.89■□□□□ 0.13
UPF1-206ENST00000598471 CHST9Q7L1S5 443 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 GSTA5Q7RTV2 222 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 FAM217AQ8IXS0 508 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 CPXM2Q8N436 756 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 RSAD2Q8WXG1 361 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 FGF13Q92913 245 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 SLCO2A1Q92959 643 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 IGSF8Q969P0 613 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 OTUB2Q96DC9 234 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 ZSWIM3Q96MP5 696 aa15.89■□□□□ 0.13
UPF1-206ENST00000598471 NECTIN4Q96NY8 510 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms